RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 BBS10Q8TAM1 723 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 SLC38A5Q8WUX1 472 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 ATOH1Q92858 354 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 EXOSC8Q96B26 276 aaKnown RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 C12orf43Q96C57 262 aaKnown RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 ERLEC1Q96DZ1 483 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 SLC35G5Q96KT7 338 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 AMDHD1Q96NU7 426 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 TEFMQ96QE5 360 aaKnown RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 MAPKAP1Q9BPZ7 522 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 C17orf62Q9BQA9 187 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 SRMSQ9H3Y6 488 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 XKR8Q9H6D3 395 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 TBC1D17Q9HA65 648 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 PLCXD1Q9NUJ7 323 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 CALML5Q9NZT1 146 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 PHF11Q9UIL8 331 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 KCND3Q9UK17 655 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 ACSL6Q9UKU0 697 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 ASB4Q9Y574 426 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 KRBA1A5PL33 1030 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 OR52A4PA6NMU1 304 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 ISM1B1AKI9 464 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 C10orf142B7Z368 130 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 PRAMEF26H0Y7S4 382 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 ZW10O43264 779 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 ERI3O43414 337 aaKnown RBP12.85□□□□□ -0.35
LIMS1-205ENST00000410093 ASNA1O43681 348 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 AGR2O95994 175 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 SERPIND1P05546 499 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 IFI6P09912 130 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 CSNK2A2P19784 350 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-205ENST00000410093 GPC1P35052 558 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 LIMS1P48059 325 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 TPMTP51580 245 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 PLA2G16P53816 162 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 HYAL2Q12891 473 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 MAD2L1BPQ15013 274 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-205ENST00000410093 NEDD8Q15843 81 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 PRSS53Q2L4Q9 553 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 TOR1AIP1Q5JTV8 583 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 COLEC12Q5KU26 742 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 GTF2IRD2BQ6EKJ0 949 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 XAF1Q6GPH4 301 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 LINC00299Q6ZSB3 139 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 GALNT5Q7Z7M9 940 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 GALNT10Q86SR1 603 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 GTF2IRD2Q86UP8 949 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 FAM124AQ86V42 546 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 PAQR7Q86WK9 346 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 CROCCP3Q8IVE0 287 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 RBM12BQ8IXT5 1001 aaKnown RBP12.85□□□□□ -0.35
LIMS1-205ENST00000410093 TMEM145Q8NBT3 493 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 OR1E3Q8WZA6 343 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 FCGR1BQ92637 280 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 RSC1A1Q92681 617 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 MUL1Q969V5 352 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 BMFQ96LC9 184 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF354BQ96LW1 612 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 TRIM45Q9H8W5 580 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-205ENST00000410093 FANCEQ9HB96 536 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 C3orf14Q9HBI5 128 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 POLMQ9NP87 494 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-205ENST00000410093 SLAMF7Q9NQ25 335 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 MS4A12Q9NXJ0 267 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 TBC1D29Q9UFV1 150 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 RAB23Q9ULC3 237 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 LIPT1Q9Y234 373 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 SIT1Q9Y3P8 196 aa12.85□□□□□ -0.35
LIMS1-205ENST00000410093 A6NCN8 305 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 POM121BA6NF01 834 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 HMGN4O00479 90 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 HAT1O14929 419 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 CASC3O15234 703 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 CCNB2O95067 398 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 MFN2O95140 757 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 GADD45GO95257 159 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 TNFP01375 233 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 FHP07954 510 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 SLC35G6P0C7Q6 338 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 IL7RP16871 459 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 GGT2P36268 569 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 CRISP3P54108 245 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 SRP54P61011 504 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 RPP38P78345 283 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 SLC35A2P78381 396 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 ILF3Q12906 894 aaKnown RBP eCLIP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 PPP1R8Q12972 351 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 HSPB3Q12988 150 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 SIM2Q14190 667 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 SLC48A1Q6P1K1 146 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 KIAA1324Q6UXG2 1013 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 PRSS48Q7RTY5 328 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 TSEN54Q7Z6J9 526 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 ASPGQ86U10 573 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 HORMAD2Q8N7B1 307 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 PHF10Q8WUB8 498 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 FKBP10Q96AY3 582 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 FEVQ99581 238 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 GSDMCQ9BYG8 508 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms