RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ALOXE3Q9BYJ1 711 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 SLC52A3Q9NQ40 469 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 WDR70Q9NW82 654 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 NXT1Q9UKK6 140 aaKnown RBP16.97■□□□□ 0.31
SDC1-203ENST00000403076 VSTM2BA6NLU5 285 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 RNASET2O00584 256 aaKnown RBP16.96■□□□□ 0.31
SDC1-203ENST00000403076 MRASO14807 208 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 AIM2O14862 343 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 OR10H2O60403 315 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 ABCB1P08183 1280 aaPredicted RBP16.96■□□□□ 0.31
SDC1-203ENST00000403076 CPMP14384 443 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 SPINK2P20155 84 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 MNAT1P51948 309 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 WNT3P56703 355 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 MXRA7P84157 204 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 LRRC74AQ0VAA2 488 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 RTP5Q14D33 572 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 NCF4Q15080 339 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 TLR1Q15399 786 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 MPEG1Q2M385 716 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 REP15Q6BDI9 236 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 MRPL14Q6P1L8 145 aaKnown RBP16.96■□□□□ 0.31
SDC1-203ENST00000403076 MED25Q71SY5 747 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 LRRC25Q8N386 305 aaPredicted RBP16.96■□□□□ 0.31
SDC1-203ENST00000403076 PCYOX1LQ8NBM8 494 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 CT55Q8WUE5 264 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 RCN3Q96D15 328 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 NXPE2Q96DL1 559 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 NPAS2Q99743 824 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 SCNM1Q9BWG6 230 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 VN1R1Q9GZP7 353 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 WDR54Q9H977 334 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 EFCAB1Q9HAE3 211 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 ASCL3Q9NQ33 180 aa16.96■□□□□ 0.31
SDC1-203ENST00000403076 PTRH2Q9Y3E5 179 aaKnown RBP16.96■□□□□ 0.31
SDC1-203ENST00000403076 A0A1W2PS29 197 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 MYO1GB0I1T2 1018 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 FBP2O00757 339 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 BRINP1O60477 761 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 CNOT3O75175 753 aaKnown RBP16.96■□□□□ 0.3
SDC1-203ENST00000403076 ANP32DO95626 131 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 C6orf47O95873 294 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 IFNA16P05015 189 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 CALB2P22676 271 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 GPC1P35052 558 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 EMP2P54851 167 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 PCBP4P57723 403 aaKnown RBP16.96■□□□□ 0.3
SDC1-203ENST00000403076 FOXL2P58012 376 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 RPS15P62841 145 aaKnown RBP16.96■□□□□ 0.3
SDC1-203ENST00000403076 HSPB3Q12988 150 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 BIKQ13323 160 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 SERTAD2Q14140 314 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 NSDHLQ15738 373 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 PAGE3Q5JUK9 113 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 FAAH2Q6GMR7 532 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 SCUBE1Q8IWY4 988 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 CLECL1Q8IZS7 167 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 ENDOVQ8N8Q3 282 aaKnown RBP16.96■□□□□ 0.3
SDC1-203ENST00000403076 OR4A15Q8NGL6 344 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 METTL21AQ8WXB1 218 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 OR5P2Q8WZ92 322 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 TSLPQ969D9 159 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 RBM18Q96H35 190 aaKnown RBP16.96■□□□□ 0.3
SDC1-203ENST00000403076 PANX1Q96RD7 426 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 CRB3Q9BUF7 120 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 GLIPR2Q9H4G4 154 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 NECTIN3Q9NQS3 549 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 ACSS1Q9NUB1 689 aaPredicted RBP16.96■□□□□ 0.3
SDC1-203ENST00000403076 BTNL2Q9UIR0 455 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 C3orf18Q9UK00 162 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 PADI2Q9Y2J8 665 aa16.96■□□□□ 0.3
SDC1-203ENST00000403076 SPTBN2O15020 2390 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 ASPDHA6ND91 283 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 IDSB3KWA1 339 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 RFXANKO14593 260 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 SCN2BO60939 215 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 DXOO77932 396 aaKnown RBP16.95■□□□□ 0.3
SDC1-203ENST00000403076 SLC35E2P0CK97 266 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 RHAGQ02094 409 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 ART3Q13508 389 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 NFYCQ13952 458 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 ZNF551Q7Z340 670 aaPredicted RBP16.95■□□□□ 0.3
SDC1-203ENST00000403076 RETREG3Q86VR2 466 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 IL22RA1Q8N6P7 574 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 PLPP5Q8NEB5 264 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 C7orf57Q8NEG2 295 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 ZNF681Q96N22 645 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 CCDC115Q96NT0 180 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 AMDHD1Q96NU7 426 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 DGAT2Q96PD7 388 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 SPSB2Q99619 263 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 IL1RL2Q9HB29 575 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 SLAMF7Q9NQ25 335 aa16.95■□□□□ 0.3
SDC1-203ENST00000403076 SDK2Q58EX2 2172 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 TGFBR3LH3BV60 316 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 KCNH1O95259 989 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 RECKO95980 971 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 RAB40ALP0C0E4 278 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 TNNI3P19429 210 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 NT5EP21589 574 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms