RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 PCNPQ8WW12 178 aaKnown RBP19.93■□□□□ 0.78
CTCF-202ENST00000401394 STUB1Q9UNE7 303 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 TRAPPC4Q9Y296 219 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 LOC102723532A0A0G2JNH3 316 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 LALBAP00709 142 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 ASMTP46597 345 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 SNRPD1P62314 119 aaKnown RBP19.93■□□□□ 0.78
CTCF-202ENST00000401394 KRR1Q13601 381 aaKnown RBP19.93■□□□□ 0.78
CTCF-202ENST00000401394 MED27Q6P2C8 311 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 LHFPL3Q86UP9 236 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 SIX5Q8N196 739 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 NANOGP1Q8N7R0 232 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 LRR1Q96L50 414 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 DHRS1Q96LJ7 313 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 C3orf14Q9HBI5 128 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 K7ESM1 405 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 FRS3O43559 492 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 GPR37L1O60883 481 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 TSC22D2O75157 780 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 PRKRAO75569 313 aaKnown RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 CH25HO95992 272 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 URODP06132 367 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 GSTM1P09488 218 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CEP78Q5JTW2 689 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CLEC12AQ5QGZ9 265 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 PLEKHS1Q5SXH7 462 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 TMEM220Q6QAJ8 160 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 JPH3Q8WXH2 748 aaPredicted RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 MAPKAP1Q9BPZ7 522 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 EGLN3Q9H6Z9 239 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 STOML2Q9UJZ1 356 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 SSR3Q9UNL2 185 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 HYKKA2RU49 373 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 TNFRSF10AO00220 468 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 MYL12BO14950 172 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 HPGDSO60760 199 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 SLCO2B1O94956 709 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 MPC1LP0DKB6 136 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 RHCEP18577 417 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 DSTNP60981 165 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 LRRC32Q14392 662 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 GRIN2CQ14957 1233 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 SYPL1Q16563 259 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CLPPQ16740 277 aaPredicted RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 TATDN3Q17R31 274 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 SPDYE7PQ495Y7 208 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CRTC2Q53ET0 693 aaPredicted RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 YIF1BQ5BJH7 314 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 UNC5DQ6UXZ4 953 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CFAP206Q8IYR0 622 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 OR52I1Q8NGK6 324 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 SNAPC3Q92966 411 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 ECHDC3Q96DC8 303 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 LYSMD1Q96S90 227 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 HDHD5Q9BXW7 423 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 A0A1W2PRU2 124 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 PRAMEF27A3QJZ7 478 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CA12O43570 354 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 PSIP1O75475 530 aaKnown RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 OSMP13725 252 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 HMGA2P52926 109 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 SCN1BQ07699 218 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CRB2Q5IJ48 1285 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 SPOUT1Q5T280 376 aaKnown RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 TYW3Q6IPR3 259 aaKnown RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 PGBD2Q6P3X8 592 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 TRIM40Q6P9F5 258 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CASP12Q6UXS9 341 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 ZNF783Q6ZMS7 281 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 AMER3Q8N944 861 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 SLC25A46Q96AG3 418 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 ZBED6CLQ96FA7 236 aaPredicted RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 KATNB1Q9BVA0 655 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 IL21Q9HBE4 155 aa19.92■□□□□ 0.78
CTCF-202ENST00000401394 CNOT2Q9NZN8 540 aaKnown RBP19.92■□□□□ 0.78
CTCF-202ENST00000401394 C2orf92A0A1B0GVN3 265 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 HRO43593 1189 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 TP53P04637 393 aaPredicted RBP19.91■□□□□ 0.78
CTCF-202ENST00000401394 OR4M1Q8NGD0 313 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 C9orf43Q8TAL5 461 aaPredicted RBP19.91■□□□□ 0.78
CTCF-202ENST00000401394 ANKRA2Q9H9E1 313 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 MIEF1Q9NQG6 463 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 NDUFB11Q9NX14 153 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 KCNE2Q9Y6J6 123 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 PIPSLA2A3N6 862 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 ANHXE9PGG2 379 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 ARAFP10398 606 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 ARSIQ5FYB1 569 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 CDKL4Q5MAI5 379 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 KLK6Q92876 244 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 POP5Q969H6 163 aaKnown RBP19.91■□□□□ 0.78
CTCF-202ENST00000401394 FRMD6Q96NE9 622 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 RNF121Q9H920 327 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 GALNT9Q9HCQ5 603 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 SEMA3GQ9NS98 782 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 PCYT1BQ9Y5K3 369 aaPredicted RBP19.91■□□□□ 0.78
CTCF-202ENST00000401394 DSPPQ9NZW4 1301 aa19.91■□□□□ 0.78
CTCF-202ENST00000401394 MANSC4A6NHS7 340 aaPredicted RBP19.9■□□□□ 0.78
CTCF-202ENST00000401394 LEFTY1O75610 366 aa19.9■□□□□ 0.78
CTCF-202ENST00000401394 ALX3O95076 343 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms