RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 OR7G3Q8NG95 312 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 HUS1BQ8NHY5 278 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 REPS1Q96D71 796 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 MVB12AQ96EY5 273 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 C11orf24Q96F05 449 aaPredicted RBP9.65□□□□□ -0.86
VPS53-202ENST00000389040 TBCDQ9BTW9 1192 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 UGT2B28Q9BY64 529 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 ANKRD60Q9BZ19 345 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 DPH1Q9BZG8 443 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 SPRY4Q9C004 299 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 PCDHGA4Q9Y5G9 962 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 B3GALT1Q9Y5Z6 326 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 URADA6NGE7 173 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 CXCR6O00574 342 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 RFXANKO14593 260 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 ETHE1O95571 254 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 B3GALT4O96024 378 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 KLK3P07288 261 aaPredicted RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 COX7A2P14406 83 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SLC5A2P31639 672 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 ETV5P41161 510 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 CDKN2CP42773 168 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 ARFIP1P53367 373 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 REEP5Q00765 189 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 CHRNB3Q05901 458 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 FAM53BQ14153 422 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 KCNAB1Q14722 419 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 GPR19Q15760 415 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 NDUFA9Q16795 377 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 UGT8Q16880 541 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SPIN4Q56A73 249 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 OR4F3Q6IEY1 312 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 MED27Q6P2C8 311 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 ISLR2Q6UXK2 745 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 ESX1Q8N693 406 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 TTC29Q8NA56 475 aaPredicted RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 OR52E4Q8NGH9 312 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SNIP1Q8TAD8 396 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 TFAP2CQ92754 450 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 FAM162AQ96A26 154 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 TM4SF19Q96DZ7 209 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 AURKBQ96GD4 344 aaPredicted RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 VPS50Q96JG6 964 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 NDC1Q9BTX1 674 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 BDH2Q9BUT1 245 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 YIPF3Q9GZM5 350 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 REXO4Q9GZR2 422 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 CLK4Q9HAZ1 481 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 CUEDC1Q9NWM3 386 aaPredicted RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 ZNF639Q9UID6 485 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 COL27A1Q8IZC6 1860 aaPredicted RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 DLGAP1O14490 977 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 EI24O14681 340 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 CLOCKO15516 846 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 PRAMEF10O60809 474 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SCRG1O75711 98 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 ONECUT2O95948 504 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SLC35G6P0C7Q6 338 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 CCNYL3P0C7X3 344 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SPINK2P20155 84 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 PIK3CBP42338 1070 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 TRPC1P48995 793 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 GZMMP51124 257 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 PCBP4P57723 403 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 RAE1P78406 368 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 PRTGQ2VWP7 1150 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 CATSPEREQ5SY80 951 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 KRT80Q6KB66 452 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 PWWP2BQ6NUJ5 590 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 FAM20CQ8IXL6 584 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 LAS2Q8IYD9 372 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 C1orf52Q8N6N3 182 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 ZNF248Q8NDW4 579 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 OR7A2PQ8NGA2 310 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 OR8J2Q8NGG1 315 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 OR1L3Q8NH93 324 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 CDC26Q8NHZ8 85 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 STARD8Q92502 1023 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 NCLNQ969V3 563 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 FAM120BQ96EK7 910 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 REXO5Q96IC2 774 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 PRPF18Q99633 342 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 ADI1Q9BV57 179 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 TMEM121BQ9BXQ6 578 aaPredicted RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 MRPS26Q9BYN8 205 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 ULBP3Q9BZM4 244 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SLC7A5P2Q9GIP4 190 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 KLHL25Q9H0H3 589 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 RHBGQ9H310 441 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 PRM3Q9NNZ6 103 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 FAM120CQ9NX05 1096 aaKnown RBP9.64□□□□□ -0.87
VPS53-202ENST00000389040 CDC14AQ9UNH5 594 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SH2B3Q9UQQ2 575 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 SLC22A7Q9Y694 548 aa9.64□□□□□ -0.87
VPS53-202ENST00000389040 A0A0J9YVX5 310 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 H0YGG7 62 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 HAT1O14929 419 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 SCAMP2O15127 329 aaKnown RBP9.63□□□□□ -0.87
VPS53-202ENST00000389040 OR1F1O43749 312 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 DEAF1O75398 565 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms