RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ACSM2AQ08AH3 577 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 EPS8Q12929 822 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 NR0B2Q15466 257 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 NKG7Q16617 165 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 ACSM2BQ68CK6 577 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 OR4F3Q6IEY1 312 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 SLC16A12Q6ZSM3 486 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 SERPINA11Q86U17 422 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 STK32CQ86UX6 486 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 ANKRD46Q86W74 232 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 TRIM48Q8IWZ4 208 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 CLEC4FQ8N1N0 589 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 OR8J2Q8NGG1 315 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 ZNF480Q8WV37 535 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 TFGQ92734 400 aaPredicted RBP13.56□□□□□ -0.24
HMGA1-203ENST00000374116 CCDC74AQ96AQ1 378 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 CXorf40BQ96DE9 158 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 WDR34Q96EX3 536 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 AURKBQ96GD4 344 aaPredicted RBP13.56□□□□□ -0.24
HMGA1-203ENST00000374116 FERD3LQ96RJ6 166 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 EBPLQ9BY08 206 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 FAM120CQ9NX05 1096 aaKnown RBP13.56□□□□□ -0.24
HMGA1-203ENST00000374116 PLAGL1Q9UM63 463 aa13.56□□□□□ -0.24
HMGA1-203ENST00000374116 AGRPO00253 132 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 GNGT2O14610 69 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SLC30A4O14863 429 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SCO2O43819 266 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 KCNJ13O60928 360 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 UGT2B11O75310 529 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 BCAS1O75363 584 aaPredicted RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SEC24DO94855 1032 aaPredicted RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 KRT75O95678 551 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 VIPP01282 170 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 THRBP10828 461 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 ASMTP46597 345 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 PPM1FP49593 454 aaPredicted RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 OR1D5P58170 312 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 AQP6Q13520 282 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 UGT8Q16880 541 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 ATAD3BQ5T9A4 648 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 NKAIN2Q5VXU1 208 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 BTLAQ7Z6A9 289 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 AKAP14Q86UN6 197 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 PDZD3Q86UT5 571 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 EID3Q8N140 333 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 RNF175Q8N4F7 328 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 FAM181AQ8N9Y4 354 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 ANKK1Q8NFD2 765 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 IFI44Q8TCB0 444 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 REPS1Q96D71 796 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 MTERF1Q99551 399 aaKnown RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SGPP1Q9BX95 441 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 REXO4Q9GZR2 422 aaKnown RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 LHPPQ9H008 270 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SYNDIG1Q9H7V2 258 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 ANKHQ9HCJ1 492 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 ASF1AQ9Y294 204 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 RBMX2Q9Y388 322 aaKnown RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 KCNE2Q9Y6J6 123 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SPTBN4Q9H254 2564 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 MN1Q10571 1320 aaPredicted RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 UNC13CQ8NB66 2214 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 RHPN2P1A8MT19 583 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 CCNDBP1O95273 360 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SERPINA1P01009 418 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 CKMT1AP12532 417 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 COX7A2P14406 83 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 PLA2G16P53816 162 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 UBE2IP63279 158 aaKnown RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 CHRNEQ04844 493 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 RPA4Q13156 261 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 DDX39BQ13838 428 aaKnown RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 GPR18Q14330 331 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 KRT33BQ14525 404 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 AMZ1Q400G9 498 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 C10orf62Q5T681 223 aaPredicted RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 WASH2PQ6VEQ5 465 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SLCO4C1Q6ZQN7 724 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 C17orf82Q86X59 251 aaPredicted RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 ARMC8Q8IUR7 673 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 ZCCHC7Q8N3Z6 543 aaKnown RBP13.55□□□□□ -0.24
HMGA1-203ENST00000374116 OR7A2PQ8NGA2 310 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 MUL1Q969V5 352 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 PYURFQ96I23 114 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 PANX1Q96RD7 426 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 OSBPL10Q9BXB5 764 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 WASH6PQ9NQA3 447 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 TOR4AQ9NXH8 423 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 USE1Q9NZ43 259 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 NAALAD2Q9Y3Q0 740 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 TESMINQ9Y4I5 508 aa13.55□□□□□ -0.24
HMGA1-203ENST00000374116 SPTBN2O15020 2390 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 KIR2DS5A0A0G2JLQ3 304 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 A0A0G2JNG1 304 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 NOTOA8MTQ0 251 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 KIR2DS3K7RE56 304 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 CLIC1O00299 241 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 SCN2BO60939 215 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 CLIC3O95833 236 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 NPPBP16860 134 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms