RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PRR19A6NJB7 356 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 OR52A4PA6NMU1 304 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 EFCAB9A8MZ26 197 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 ANHXE9PGG2 379 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 STATHP02808 62 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 CD72P21854 359 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 BCL6P41182 706 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 KCNJ5P48544 419 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 CRISP1P54107 249 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 RPS21P63220 83 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 ZIC1Q15915 447 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 C9orf50Q5SZB4 431 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 PPP1R14BQ96C90 147 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 AMDHD1Q96NU7 426 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 MACROD1Q9BQ69 325 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 MS4A12Q9NXJ0 267 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 SLC17A4Q9Y2C5 497 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 YBX2Q9Y2T7 364 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 OR12D1P0DN82 309 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 GDI1P31150 447 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 GRK3P35626 688 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 SERPINB10P48595 397 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 TIGD6Q17RP2 521 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 TMEM35AQ53FP2 167 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 ADCK1Q86TW2 530 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 RBM45Q8IUH3 476 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 TTLQ8NG68 377 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 OR4D11Q8NGI4 311 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 WFDC6Q9BQY6 131 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 FBXO8Q9NRD0 319 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 DZANK1Q9NVP4 752 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 SOX9P48436 509 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 CDC42P60953 191 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 ST3GAL4Q11206 333 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 KRT33BQ14525 404 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 SEC23BQ15437 767 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 SYPL1Q16563 259 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 OR52E1Q8NGJ3 308 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 S100ZQ8WXG8 99 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 ZNF354BQ96LW1 612 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 ZNF607Q96SK3 696 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 TREX2Q9BQ50 279 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 WDR12Q9GZL7 423 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 SLIRPQ9GZT3 109 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 MRPS30Q9NP92 439 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 SLC35C2Q9NQQ7 365 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 FBXL12Q9NXK8 326 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 EHD3Q9NZN3 535 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 OSGIN1Q9UJX0 560 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 DSPPQ9NZW4 1301 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 NINQ8N4C6 2090 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 DOCK8Q8NF50 2099 aa19.72■□□□□ 0.75
CCDC88B-203ENST00000359902 A0A1W2PQU0 124 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 SLC28A2O43868 658 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 PRICKLE3O43900 615 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 CBFA2T3O75081 653 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 IMPDH2P12268 514 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 HOXB3P14651 431 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 TIE1P35590 1138 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 SEC13P55735 322 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 HYAL2Q12891 473 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 RGS21Q2M5E4 152 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 ITPRIPL2Q3MIP1 535 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 ZNF776Q68DI1 518 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 KIAA1211LQ6NV74 962 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 STX19Q8N4C7 294 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 B3GNT7Q8NFL0 401 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 OR6Q1Q8NGQ2 317 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 ZNF675Q8TD23 568 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 GANCQ8TET4 914 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 SNRNP27Q8WVK2 155 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 DHRS1Q96LJ7 313 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 COL21A1Q96P44 957 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 MYADMQ96S97 322 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 RAB11FIP5Q9BXF6 653 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 SLC17A9Q9BYT1 436 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 MKRN2Q9H000 416 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 OR51I1Q9H343 314 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 RMI1Q9H9A7 625 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 SLC6A20Q9NP91 592 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 MOSPD1Q9UJG1 213 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 TMCC3Q9ULS5 477 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 C4orf51C9J302 202 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 MAN2B1O00754 1011 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 PRKRAO75569 313 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 OCM2P0CE71 109 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 OCMP0CE72 109 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 CNR2P34972 360 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 ATP1A4Q13733 1029 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 IRF3Q14653 427 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 OR5D16Q8NGK9 328 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 OR14C36Q8NHC7 312 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 VANGL1Q8TAA9 524 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 XAGE5Q8WWM1 108 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 ZHX1-C8orf76Q96EF9 292 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 RPP25Q9BUL9 199 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 REV1Q9UBZ9 1251 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 GPSM3Q9Y4H4 160 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 MYO10Q9HD67 2058 aa19.71■□□□□ 0.75
CCDC88B-203ENST00000359902 GLOD5A6NK44 160 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms