RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ZNF354CQ86Y25 554 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LACC1Q8IV20 430 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 RBFAQ8N0V3 343 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 STK40Q8N2I9 435 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF366Q8N895 744 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 IL17RCQ8NAC3 791 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 OR2A1Q8NGT9 310 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 OR2T34Q8NGX1 318 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 OR2T3Q8NH03 318 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 WDR48Q8TAF3 677 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 DYDC1Q8WWB3 177 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 DNAJC9Q8WXX5 260 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 GLYATL1Q969I3 302 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LRRC46Q96FV0 321 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CMTM7Q96FZ5 175 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 AJUBAQ96IF1 538 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 METTL2AQ96IZ6 378 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 FAR2Q96K12 515 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HIST1H2AHQ96KK5 128 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CCT7Q99832 543 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HIST1H2AJQ99878 128 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HOPXQ9BPY8 73 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 CENPOQ9BU64 300 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 RIOK2Q9BVS4 552 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 GABARAPL3Q9BY60 117 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NXF2Q9GZY0 626 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 PARVBQ9HBI1 364 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SACM1LQ9NTJ5 587 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 BAIAP2L1Q9UHR4 511 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NDRG4Q9ULP0 352 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 GPR34Q9UPC5 381 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ASB4Q9Y574 426 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 DNAH3Q8TD57 4116 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 BRWD1Q9NSI6 2320 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 WASHC1A8K0Z3 465 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SCAMP2O15127 329 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 B4GAT1O43505 415 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SEC22BO75396 215 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 BMP10O95393 424 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SNAP29O95721 258 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ABHD16AO95870 558 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 FGBP02675 491 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 C6P13671 934 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 HLA-EP13747 358 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CKMT2P17540 419 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MATN1P21941 496 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ME2P23368 584 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PI4KAP42356 2102 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MAGEA10P43363 369 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 KIR2DL3P43628 341 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ERFP50548 548 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 IST1P53990 364 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CRISP3P54108 245 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 IFITM3Q01628 133 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CNTN1Q12860 1018 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CSTF3Q12996 717 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 CUL3Q13618 768 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 FHL3Q13643 280 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 DOC2AQ14183 400 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SIM2Q14190 667 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZNF235Q14590 738 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PTCHD3Q3KNS1 767 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZNF691Q5VV52 312 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 C1QL3Q5VWW1 255 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 LYPLAL1Q5VWZ2 237 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 LIPJQ5W064 366 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 FCRL6Q6DN72 434 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PNCKQ6P2M8 343 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 WASH2PQ6VEQ5 465 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 GPRIN3Q6ZVF9 776 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 VN1R4Q7Z5H5 301 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 GPSM1Q86YR5 675 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 GLB1L2Q8IW92 636 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 METTL4Q8N3J2 472 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 FBXO39Q8N4B4 442 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 AMER2Q8N7J2 671 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TERB1Q8NA31 727 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TRPV3Q8NET8 790 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 OR7A2PQ8NGA2 310 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 OR13F1Q8NGS4 319 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 OR5K2Q8NHB8 316 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 HM13Q8TCT9 377 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZFAND2BQ8WV99 257 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 RNF138Q8WVD3 245 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SPDL1Q96EA4 605 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 YIPF6Q96EC8 236 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 GNRHR2Q96P88 292 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 KCNC2Q96PR1 638 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SDHCQ99643 169 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 CGREF1Q99674 301 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 C1orf50Q9BV19 199 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TAPBPLQ9BX59 468 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ADGRE3Q9BY15 652 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CXorf56Q9H5V9 222 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ATP13A3Q9H7F0 1226 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 COPS7BQ9H9Q2 264 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 SLC25A19Q9HC21 320 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZDHHC4Q9NPG8 344 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 DLGAP2Q9P1A6 1054 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms