RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 GDPGP1Q6ZNW5 385 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 USP45Q70EL2 814 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 PDZD3Q86UT5 571 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 ELMOD2Q8IZ81 293 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 FAM181AQ8N9Y4 354 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 OR2AP1Q8NGE2 309 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 BTN2A2Q8WVV5 523 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 DEDD2Q8WXF8 326 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 VOPP1Q96AW1 172 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 SORBS1Q9BX66 1292 aaKnown RBP21.28■■□□□ 1
TRIM28-202ENST00000341753 RACGAP1Q9H0H5 632 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 LINC00597Q9H2U6 94 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 TMEM38AQ9H6F2 299 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 IL21Q9HBE4 155 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 TMCC3Q9ULS5 477 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 ANGPT4Q9Y264 503 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 DSPPQ9NZW4 1301 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 ZSCAN5BA6NJL1 495 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 UGDHO60701 494 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 PCBP3P57721 371 aaKnown RBP21.28■■□□□ 1
TRIM28-202ENST00000341753 RBBP4Q09028 425 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 PLEKHS1Q5SXH7 462 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 DDI2Q5TDH0 399 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 MEX3DQ86XN8 651 aaKnown RBP21.28■■□□□ 1
TRIM28-202ENST00000341753 HCAR2Q8TDS4 363 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 FAM83DQ9H4H8 585 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 CFAP97Q9P2B7 532 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 NLKQ9UBE8 527 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 B4GALT6Q9UBX8 382 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 ENOPH1Q9UHY7 261 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 AP1M2Q9Y6Q5 423 aa21.28■■□□□ 1
TRIM28-202ENST00000341753 HELZP42694 1942 aaKnown RBP21.27■■□□□ 1
TRIM28-202ENST00000341753 PRKYO43930 277 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 BCHEP06276 602 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 PBLDP30039 288 aaPredicted RBP21.27■■□□□ 1
TRIM28-202ENST00000341753 GSTM5P46439 218 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 SNRPGP62308 76 aaKnown RBP21.27■■□□□ 1
TRIM28-202ENST00000341753 LSM11P83369 360 aaKnown RBP eCLIP21.27■■□□□ 12e-9■□□□□ 10.1
TRIM28-202ENST00000341753 MLLT11Q13015 90 aaPredicted RBP21.27■■□□□ 1
TRIM28-202ENST00000341753 NCF4Q15080 339 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 ZNF630Q2M218 657 aaPredicted RBP21.27■■□□□ 1
TRIM28-202ENST00000341753 SIGIRRQ6IA17 410 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 GAREM2Q75VX8 874 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 ZFAND1Q8TCF1 268 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 BRF2Q9HAW0 419 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 RPL36Q9Y3U8 105 aaKnown RBP21.27■■□□□ 1
TRIM28-202ENST00000341753 MYO7AQ13402 2215 aa21.27■■□□□ 1
TRIM28-202ENST00000341753 IFNA14P01570 189 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 FURINP09958 794 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 WEE1P30291 646 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 PCDH1Q08174 1060 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 P2RY14Q15391 338 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 OR52P1PQ8NH57 321 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 RAB8BQ92930 207 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 MSLNLQ96KJ4 702 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 POLR2J3Q9H1A7 115 aaKnown RBP21.27■□□□□ 0.99
TRIM28-202ENST00000341753 ATP6V1HQ9UI12 483 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 MAPRE3Q9UPY8 281 aa21.27■□□□□ 0.99
TRIM28-202ENST00000341753 CHD7Q9P2D1 2997 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 SLC16A5O15375 505 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 TEX28O15482 410 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 SGTAO43765 313 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 CXCL10P02778 98 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 ARAFP10398 606 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 IMPA1P29218 277 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 SPINT3P49223 89 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 EPHB3P54753 998 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 TARDBPQ13148 414 aaKnown RBP eCLIP21.26■□□□□ 0.99
TRIM28-202ENST00000341753 HEPACAMQ14CZ8 416 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 SHFQ7M4L6 423 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 HMGN2P46Q86SG4 172 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 GDPD1Q8N9F7 314 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 PROKR2Q8NFJ6 384 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 OR4M1Q8NGD0 313 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 TRMT2BQ96GJ1 504 aaKnown RBP21.26■□□□□ 0.99
TRIM28-202ENST00000341753 A0A1W2PRB8 838 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 GPR37L1O60883 481 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 KLK1P06870 262 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 ELAVL4P26378 380 aaKnown RBP21.26■□□□□ 0.99
TRIM28-202ENST00000341753 SYTL3Q4VX76 610 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 CRTC2Q53ET0 693 aaPredicted RBP21.26■□□□□ 0.99
TRIM28-202ENST00000341753 LCN1P1Q5VSP4 162 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 MEDAGQ5VYS4 303 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 GPR32P1Q8NGA4 272 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 OR52I1Q8NGK6 324 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 GOT1L1Q8NHS2 421 aaPredicted RBP21.26■□□□□ 0.99
TRIM28-202ENST00000341753 ASZ1Q8WWH4 475 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 GATAD2BQ8WXI9 593 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 MAGEB10Q96LZ2 347 aaPredicted RBP21.26■□□□□ 0.99
TRIM28-202ENST00000341753 KATNB1Q9BVA0 655 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 STOML2Q9UJZ1 356 aa21.26■□□□□ 0.99
TRIM28-202ENST00000341753 NCR1O76036 304 aa21.25■□□□□ 0.99
TRIM28-202ENST00000341753 ALAS2P22557 587 aa21.25■□□□□ 0.99
TRIM28-202ENST00000341753 MAP2K3P46734 347 aa21.25■□□□□ 0.99
TRIM28-202ENST00000341753 DSTNP60981 165 aa21.25■□□□□ 0.99
TRIM28-202ENST00000341753 DCST1Q5T197 706 aa21.25■□□□□ 0.99
TRIM28-202ENST00000341753 Q6ZNB5 142 aa21.25■□□□□ 0.99
TRIM28-202ENST00000341753 DPY19L3Q6ZPD9 716 aa21.25■□□□□ 0.99
TRIM28-202ENST00000341753 SLC39A11Q8N1S5 342 aa21.25■□□□□ 0.99
TRIM28-202ENST00000341753 C16orf78Q8WTQ4 265 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms