RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 NCF4Q15080 339 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 LGALSLQ3ZCW2 172 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 RNASE12Q5GAN4 147 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 RPS26P11Q5JNZ5 115 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 TMEM81Q6P7N7 255 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 IL20RBQ6UXL0 311 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 UBE2R2Q712K3 238 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 PRSS42Q7Z5A4 293 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 LAPTM4BQ86VI4 370 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 C1orf52Q8N6N3 182 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 FBXW5Q969U6 566 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 ZC3HAV1LQ96H79 300 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 TM6SF2Q9BZW4 377 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 FZD3Q9NPG1 666 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 FAM120CQ9NX05 1096 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 EYSQ5T1H1 3165 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 F5H5T6 163 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 TRIM3O75382 744 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 TALDO1P37837 337 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 EVX1P49640 407 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 ABRQ12979 859 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 PUM1Q14671 1186 aaKnown RBP eCLIP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 ZNF770Q6IQ21 691 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 ARSKQ6UWY0 536 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 DDX53Q86TM3 631 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 KIF18BQ86Y91 864 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 NPAS3Q8IXF0 933 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 MARVELD3Q96A59 401 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 SOSTQ9BQB4 213 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 TMED9Q9BVK6 235 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 ERVMER34-1Q9H9K5 563 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 TBC1D17Q9HA65 648 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 MCCC2Q9HCC0 563 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 ATP6V1HQ9UI12 483 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 ING4Q9UNL4 249 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 NOD1Q9Y239 953 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 PRKAB1Q9Y478 270 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 AUP1Q9Y679 476 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 CHD5Q8TDI0 1954 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 GSAPA4D1B5 854 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 OR10H3O60404 316 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 C6orf47O95873 294 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 LALBAP00709 142 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 PIPP12273 146 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 PSMA3P25788 255 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 GSTM5P46439 218 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 MAPKAPK2P49137 400 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 ALDH9A1P49189 494 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 NFATC2Q13469 925 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CHRNA6Q15825 494 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 IER5LQ5T953 404 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CSGALNACT1Q8TDX6 532 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 UBTD2Q8WUN7 234 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CHTF18Q8WVB6 975 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 FOXJ1Q92949 421 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 ATF6BQ99941 703 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 KCNN2Q9H2S1 579 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 VPS29Q9UBQ0 182 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 FCF1Q9Y324 198 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 XIRP2A4UGR9 3374 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 H7C0S8 307 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 SCAMP2O15127 329 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 OR12D1P0DN82 309 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 RPL9P32969 192 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CRYZQ08257 329 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 ACSM2AQ08AH3 577 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 GRB14Q14449 540 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 ACSM2BQ68CK6 577 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CASP12Q6UXS9 341 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 TMEM91Q6ZNR0 172 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 KIAA0907Q7Z7F0 614 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 TLK2Q86UE8 772 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 RBFAQ8N0V3 343 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 GHDCQ8N2G8 530 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 LINC00052Q96N35 136 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 RBP7Q96R05 134 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 KCNJ15Q99712 375 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 P2RY13Q9BPV8 354 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 NUDT15Q9NV35 164 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CRLS1Q9UJA2 301 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 PCDHGB7Q9Y5F8 929 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 K7ERQ8 282 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 QSOX1O00391 747 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 SAP18O00422 153 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 HLA-DQB1P01920 261 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 ANXA4P09525 319 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 ELNP15502 786 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CPEP16870 476 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CCR7P32248 378 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 PSEN2P49810 448 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 XKP51811 444 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 RPS26P62854 115 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 RAE1P78406 368 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 GRK1Q15835 563 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 FAM110CQ1W6H9 321 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 GPR139Q6DWJ6 353 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 ZNF782Q6ZMW2 699 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 CFAP77Q6ZQR2 320 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 RNF165Q6ZSG1 346 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 RFLNAQ6ZTI6 216 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms