RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 LAPTM4AQ15012 233 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 FAM214AQ32MH5 1076 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 LIPKQ5VXJ0 399 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 ZNF572Q7Z3I7 529 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-201ENST00000302528 RAB8BQ92930 207 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 BSCL2Q96G97 398 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-201ENST00000302528 ZNF599Q96NL3 588 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 CDC6Q99741 560 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 SAMD10Q9BYL1 202 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 MMP27Q9H306 513 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 C2CD4BA6NLJ0 364 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 IRAK2O43187 625 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 NDUFV2P19404 249 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 RUNX2Q13950 521 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 ABHD15Q6UXT9 468 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 TMPRSS7Q7RTY8 843 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 CCDC71LQ8N9Z2 235 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 GOLM1Q8NBJ4 401 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 BBS10Q8TAM1 723 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 THAP3Q8WTV1 239 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-201ENST00000302528 PTCHD1Q96NR3 888 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 ZFP57Q9NU63 452 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 DNAJB4Q9UDY4 337 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 ACSL5Q9ULC5 683 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 TMEM98Q9Y2Y6 226 aa9.98□□□□□ -0.81
CLIP1-201ENST00000302528 MAGED1Q9Y5V3 778 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-201ENST00000302528 ADRB3P13945 408 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 POLR2CP19387 275 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 GABRA3P34903 492 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 PITPNBP48739 271 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 SNTB2Q13425 540 aaKnown RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 ZNF829Q3KNS6 432 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 XKR5Q6UX68 686 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 SNX27Q96L92 541 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 HIPK2Q9H2X6 1198 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 MRPL15Q9P015 296 aaKnown RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 ACTR3BQ9P1U1 418 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 COL20A1Q9P218 1284 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 NAALAD2Q9Y3Q0 740 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 PLEKHM1Q9Y4G2 1056 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 ST14Q9Y5Y6 855 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 TRBV2A0A0J9YWF9 115 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 PRSS51A0A1B0GVH4 220 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 SOCS2O14508 198 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 CDC123O75794 336 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 RHOP08100 348 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 HOXB2P14652 356 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 ETV5P41161 510 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 DUSP3P51452 185 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 RPP30P78346 268 aaKnown RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 SLC27A4Q6P1M0 643 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.97□□□□□ -0.815e-8■■■■■ 43.8
CLIP1-201ENST00000302528 WDR20Q8TBZ3 569 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 CDKN2AIPNLQ96HQ2 116 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 DTLQ9NZJ0 730 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 DLGAP4Q9Y2H0 992 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 LSM5Q9Y4Y9 91 aaKnown RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 CHRNB1P11230 501 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 PTPN6P29350 595 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 BDKRB2P30411 391 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 GRPRP30550 384 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 EEF1A2Q05639 463 aaKnown RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 DGKZQ13574 1117 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 TGFBIQ15582 683 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 GPRC6AQ5T6X5 926 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 AGTRAPQ6RW13 159 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 Q6ZVU0 165 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 ZNF695Q8IW36 515 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 OR4D6Q8NGJ1 314 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 DAZAP1Q96EP5 407 aaKnown RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 FBXL20Q96IG2 436 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 RAB9BQ9NP90 201 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 RXFP3Q9NSD7 469 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 FAIMQ9NVQ4 179 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 C17orf113A0A1B0GUU1 675 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 YJEFN3A6XGL0 299 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 ZNF705GA8MUZ8 300 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 C2orf74A8MZ97 194 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 UPK3BL1B0FP48 263 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 UPK3BL2E5RIL1 263 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 ZNF821O75541 412 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 EOMESO95936 686 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 MAS1P04201 325 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 HLA-DQB2P05538 268 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 G6PDP11413 515 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 ASPAP45381 313 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 OR1E2P47887 323 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 TREML2Q5T2D2 321 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 KIAA0319Q5VV43 1072 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 RPL13AP3Q6NVV1 102 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 NRROSQ86YC3 692 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 DCUN1D3Q8IWE4 304 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 FAM83FQ8NEG4 500 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 OR2AP1Q8NGE2 309 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 OR51A7Q8NH64 312 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 CD99L2Q8TCZ2 262 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 HAPLN3Q96S86 360 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 SECISBP2Q96T21 854 aaKnown RBP9.97□□□□□ -0.81
CLIP1-201ENST00000302528 P2RY13Q9BPV8 354 aa9.97□□□□□ -0.81
CLIP1-201ENST00000302528 C14orf119Q9NWQ9 140 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms