RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MARCH4Q9P2E8 410 aaPredicted RBP18.34■□□□□ 0.53
UPF1-201ENST00000262803 RHCGQ9UBD6 479 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 ENTPD2Q9Y5L3 495 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 IRS2Q9Y4H2 1338 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 GJB5O95377 273 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 RORAP35398 523 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 ENTPD1P49961 510 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 RUNX3Q13761 415 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 CDKL4Q5MAI5 379 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 NUP43Q8NFH3 380 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 ZFAND2BQ8WV99 257 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 SOX17Q9H6I2 414 aaPredicted RBP18.34■□□□□ 0.53
UPF1-201ENST00000262803 CMAHPQ9Y471 501 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 ARFGEF2Q9Y6D5 1785 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 JUNDP17535 347 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 HTR1EP28566 365 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 GTF2IRD2BQ6EKJ0 949 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 GTF2IRD2Q86UP8 949 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 THAP4Q8WY91 577 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 NECAB3Q96P71 396 aaPredicted RBP18.34■□□□□ 0.53
UPF1-201ENST00000262803 HAPLN2Q9GZV7 340 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 AIG1Q9NVV5 245 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 DNAJC27Q9NZQ0 273 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 PTGDR2Q9Y5Y4 395 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 A0A1W2PQU0 124 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 ZNF840PA6NDX5 716 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 IRF2P14316 349 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 SLC3A1Q07837 685 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 UGT3A2Q3SY77 523 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 CRYGNQ8WXF5 182 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 PREBQ9HCU5 417 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 MAGED1Q9Y5V3 778 aaPredicted RBP18.33■□□□□ 0.53
UPF1-201ENST00000262803 ISPDA4D126 451 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 DLGAP1O14490 977 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 ZNF35P13682 527 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 NOVP48745 357 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 CEBPGP53567 150 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 MARVELD2Q8N4S9 558 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 TMEM41AQ96HV5 264 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 ADAMTS10Q9H324 1103 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 NUDT15Q9NV35 164 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 TAS2R10Q9NYW0 307 aa18.33■□□□□ 0.53
UPF1-201ENST00000262803 CD9P21926 228 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 EDNRBP24530 442 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 BMPR1AP36894 532 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 SCGB2B2Q4G0G5 96 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 COQ5Q5HYK3 327 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 SLC27A4Q6P1M0 643 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 HSPA12BQ96MM6 686 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 MROQ9BYG7 248 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 PITHD1Q9GZP4 211 aaPredicted RBP18.33■□□□□ 0.52
UPF1-201ENST00000262803 NUFIP1Q9UHK0 495 aaKnown RBP18.33■□□□□ 0.52
UPF1-201ENST00000262803 C8orf89P0DMQ9 161 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 RBMXP38159 391 aaKnown RBP18.33■□□□□ 0.52
UPF1-201ENST00000262803 OR1E2P47887 323 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 CATSPEREQ5SY80 951 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 DCP2Q8IU60 420 aaKnown RBP18.33■□□□□ 0.52
UPF1-201ENST00000262803 TCEANCQ8N8B7 351 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 PIP5K1AQ99755 562 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 MAGIXQ9H6Y5 334 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 ZNF69Q9UC07 566 aa18.33■□□□□ 0.52
UPF1-201ENST00000262803 IGKV6-21A0A0C4DH24 114 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 OR6C74A6NCV1 312 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 HCRTR2O43614 444 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 OR2B3O76000 313 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 GATMP50440 423 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 E2F1Q01094 437 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 METTL2BQ6P1Q9 378 aaKnown RBP18.32■□□□□ 0.52
UPF1-201ENST00000262803 OR10T2Q8NGX3 314 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 RAB8BQ92930 207 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 DOHHQ9BU89 302 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 GHRLQ9UBU3 117 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 PLAGL1Q9UM63 463 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 BLACEA4D250 179 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 OAZ2O95190 189 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 DRD1P21728 446 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 CDKN2DP55273 166 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 CLDN10P78369 228 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 ZNF100Q8IYN0 542 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 KRTCAP2Q8N6L1 136 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 TTYH2Q9BSA4 534 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 SMG9Q9H0W8 520 aaKnown RBP18.32■□□□□ 0.52
UPF1-201ENST00000262803 H7BY64 318 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 SNNO75324 88 aaPredicted RBP18.32■□□□□ 0.52
UPF1-201ENST00000262803 RASAL1O95294 804 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 P04436 131 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 PORP16435 677 aaPredicted RBP18.32■□□□□ 0.52
UPF1-201ENST00000262803 NXPE4Q6UWF7 544 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 HACD2Q6Y1H2 254 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 C6orf120Q7Z4R8 191 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 TP53INP2Q8IXH6 220 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 FAM174AQ8TBP5 190 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 SCAMP4Q969E2 229 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 PRAP1Q96NZ9 151 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 HDHD5Q9BXW7 423 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 MMP2P08253 660 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 MEF2AQ02078 507 aaPredicted RBP18.32■□□□□ 0.52
UPF1-201ENST00000262803 DLX2Q07687 328 aaPredicted RBP18.32■□□□□ 0.52
UPF1-201ENST00000262803 RCAN2Q14206 197 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 CST6Q15828 149 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms