RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 BHLHB9Q6PI77 547 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 LAS2Q8IYD9 372 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 BMPERQ8N8U9 685 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 BTN2A2Q8WVV5 523 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 MAGEH1Q9H213 219 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 SHISA3A0PJX4 238 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 SCAMP2O15127 329 aaKnown RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 SIGLEC5O15389 551 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 KDELR3O43731 214 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 RFPL3O75679 317 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 CFDP00746 253 aaPredicted RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 KLKB1P03952 638 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 C1SP09871 688 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 LHCGRP22888 699 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 ACRV1P26436 265 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 HNF1BP35680 557 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 EPHA5P54756 1037 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 DCDC1P59894 354 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 CRYZQ08257 329 aaKnown RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 SIGLEC14Q08ET2 396 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 ZNF655Q8N720 491 aaPredicted RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 NANOGP1Q8N7R0 232 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 SENP5Q96HI0 755 aaPredicted RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 FAM193BQ96PV7 902 aaPredicted RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 GREB1Q4ZG55 1949 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 SHOXO15266 292 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 EEF1E1O43324 174 aaKnown RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 ACSL4O60488 711 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 BCHEP06276 602 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 ATF6P18850 670 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 OPRD1P41143 372 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 RHAGQ02094 409 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 MTAPQ13126 283 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 GALEQ14376 348 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 PCBP1Q15365 356 aaKnown RBP eCLIP13.67□□□□□ -0.223e-7■■■■■ 64.9
SDC1-201ENST00000254351 KLHL22Q53GT1 634 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 CRB2Q5IJ48 1285 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 LILRA3Q8N6C8 439 aaPredicted RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 HUS1BQ8NHY5 278 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 HYLS1Q96M11 299 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 ABCG5Q9H222 651 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 OR51B5Q9H339 312 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 NIPAL2Q9H841 368 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 FAM120CQ9NX05 1096 aaKnown RBP13.67□□□□□ -0.22
SDC1-201ENST00000254351 EXTL2Q9UBQ6 330 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 ING4Q9UNL4 249 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 KCNE2Q9Y6J6 123 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 C5orf42Q9H799 3197 aa13.67□□□□□ -0.22
SDC1-201ENST00000254351 SYNDIG1LA6NDD5 238 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 IGHA2P01877 340 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 F11P03951 625 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 PROS1P07225 676 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 PBLDP30039 288 aaPredicted RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 TAGLNQ01995 201 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 RGS1Q08116 209 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 ZNF791Q3KP31 576 aaPredicted RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 KANSL1Q7Z3B3 1105 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 MARCH9Q86YJ5 346 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 GPR26Q8NDV2 337 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 OR11H7Q8NGC8 314 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 OR52I1Q8NGK6 324 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 SMG7Q92540 1137 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 MYO19Q96H55 970 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 TBX5Q99593 518 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 GTPBP2Q9BX10 602 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 PAK6Q9NQU5 681 aaPredicted RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 DNAJC11Q9NVH1 559 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 CNOT2Q9NZN8 540 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 MRPL15Q9P015 296 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 FNIP2Q9P278 1114 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 PCDHB7Q9Y5E2 793 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 ANKDD1BA6NHY2 528 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 SERPINI2O75830 405 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 M6PRP20645 277 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 DRD5P21918 477 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 CORO1AP31146 461 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 PCGF2P35227 344 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 ATP6V1E1P36543 226 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 NUDT1P36639 197 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 RPS13P62277 151 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.66□□□□□ -0.22
SDC1-201ENST00000254351 EXOSC2Q13868 293 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 PUM1Q14671 1186 aaKnown RBP eCLIP13.66□□□□□ -0.22
SDC1-201ENST00000254351 GPR68Q15743 365 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 KIAA1324Q6UXG2 1013 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 MAPKAP1Q9BPZ7 522 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 TRAF4Q9BUZ4 470 aaPredicted RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 RBCK1Q9BYM8 510 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 MVB12BQ9H7P6 319 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 ASIC5Q9NY37 505 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 PLXNB2O15031 1838 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 ANKRD36A6QL64 1941 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 C1orf226A1L170 272 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 SLC30A4O14863 429 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 CD160O95971 181 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 LALBAP00709 142 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 RPL17P18621 184 aaKnown RBP13.66□□□□□ -0.22
SDC1-201ENST00000254351 TM4SF4P48230 202 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 ALDH9A1P49189 494 aa13.66□□□□□ -0.22
SDC1-201ENST00000254351 STK19P49842 368 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms