RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 DCAF12Q5T6F0 453 aa13□□□□□ -0.33
LDLR-201ENST00000252444 ADAMTS16Q8TE57 1224 aa13□□□□□ -0.33
LDLR-201ENST00000252444 RSC1A1Q92681 617 aa13□□□□□ -0.33
LDLR-201ENST00000252444 ZSWIM3Q96MP5 696 aa13□□□□□ -0.33
LDLR-201ENST00000252444 ZNF304Q9HCX3 659 aa13□□□□□ -0.33
LDLR-201ENST00000252444 A8MU76 341 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 GFYI3L273 518 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 TRMUO75648 421 aaKnown RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 CD2P06729 351 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 IL12AP29459 219 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 DGKQP52824 942 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 PDZK1Q5T2W1 519 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 PIP5KL1Q5T9C9 394 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 P4HA3Q7Z4N8 544 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 KLHL36Q8N4N3 616 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 FAM47BQ8NA70 645 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 DNAJA4Q8WW22 397 aaPredicted RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 IL17FQ96PD4 163 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 CLMPQ9H6B4 373 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 RABL2AQ9UBK7 228 aaPredicted RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 RABL2BQ9UNT1 228 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 CAB39Q9Y376 341 aaPredicted RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 TESMINQ9Y4I5 508 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 M0QX08 132 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 HIST1H1TP22492 207 aaPredicted RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 OC90Q02509 493 aaPredicted RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 GTF2IRD2BQ6EKJ0 949 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 GTF2IRD2Q86UP8 949 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 ARL14Q8N4G2 192 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 OR8J2Q8NGG1 315 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 CCDC115Q96NT0 180 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 BIRC8Q96P09 236 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 HBEGFQ99075 208 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 HDHD5Q9BXW7 423 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 SLC17A4Q9Y2C5 497 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 FOXO6A8MYZ6 492 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 ZNF670-ZNF695F2Z2N8 137 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 H3BUI4 141 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 AREL1O15033 823 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 TNFRSF17Q02223 184 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 CRB2Q5IJ48 1285 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 CLVS1Q8IUQ0 354 aaPredicted RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 CMIPQ8IY22 773 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 ST13P5Q8NFI4 369 aaPredicted RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 PROKR1Q8TCW9 393 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 LRTOMTQ8WZ04 291 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 MPP4Q96JB8 637 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 VN1R3Q9BXE9 311 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 WDR12Q9GZL7 423 aaKnown RBP12.99□□□□□ -0.33
LDLR-201ENST00000252444 ACTL7AQ9Y615 435 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 ENO4A6NNW6 628 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 METTL12A8MUP2 240 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 GMPRP36959 345 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 CAPZA1P52907 286 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 LARP4Q71RC2 724 aaKnown RBP eCLIP12.99□□□□□ -0.331e-8■■□□□ 12.5
LDLR-201ENST00000252444 ZNF619Q8N2I2 560 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 NEIL2Q969S2 332 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 C1QTNF1Q9BXJ1 281 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 PCDHGB2Q9Y5G2 931 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 OR51B4Q9Y5P0 310 aa12.99□□□□□ -0.33
LDLR-201ENST00000252444 PRKD3O94806 890 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 KLHL18O94889 574 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 P04436 131 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 GCAP28676 217 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 TUBA4AP68366 448 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 LASP1Q14847 261 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 LETMD1Q6P1Q0 360 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 FAM86B1Q8N7N1 296 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 WFDC5Q8TCV5 224 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 DDIT4LQ96D03 193 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 ALPK1Q96QP1 1244 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 MAP10Q9P2G4 905 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 EMCNQ9ULC0 261 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 PSMA1P25786 263 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 KDELR2P33947 212 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 FAUP35544 74 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 SLCO4C1Q6ZQN7 724 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 MCHR1Q99705 422 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 INTS6Q9UL03 887 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 TSC22D4Q9Y3Q8 395 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 ADAP00813 363 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 MAPK3P27361 379 aaPredicted RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 GBX2P52951 348 aaPredicted RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 MERTKQ12866 999 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 KLHL12Q53G59 568 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 OPN5Q6U736 354 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 OR52B6Q8NGF0 335 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 ZNF671Q8TAW3 534 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 PHOSPHO1Q8TCT1 267 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 SNX33Q8WV41 574 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 UFD1Q92890 307 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 CHFRQ96EP1 664 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 NUAK2Q9H093 628 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 CUTCQ9NTM9 273 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 KCND3Q9UK17 655 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 PTGES3LE9PB15 166 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 RFXAPO00287 272 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 GPR75O95800 540 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 PSMD7P51665 324 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 EMP2P54851 167 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms