RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZNF275Q9NSD4 429 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 SLCO1C1Q9NYB5 712 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TECRQ9NZ01 308 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 IL17CQ9P0M4 197 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 BCCIPQ9P287 314 aaKnown RBP eCLIP0.28□□□□□ -2.36
VPS35-212ENST00000640313 STK26Q9P289 416 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ABCD2Q9UBJ2 740 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 DBF4Q9UBU7 674 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 GIMAP2Q9UG22 337 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SNX7Q9UNH6 387 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RUVBL2Q9Y230 463 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 SH3GLB1Q9Y371 365 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TMED7Q9Y3B3 224 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 MRPL11Q9Y3B7 192 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 PCDHGA1Q9Y5H4 931 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ETV7Q9Y603 341 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CPQQ9Y646 472 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNFX1Q9P2E3 1918 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 MYO10Q9HD67 2058 aa0.28□□□□□ -2.37
VPS35-212ENST00000640313 TENM1Q9UKZ4 2725 aa0.28□□□□□ -2.37
VPS35-212ENST00000640313 IGHV3OR16-12A0A075B7B8 117 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 IQCMA0A1B0GVH7 501 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 CCDC162PA2VCL2 907 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 FAM231BA6NCW3 169 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ZFP92A6NM28 416 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 CCT8L1PA6NM43 557 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 KBTBD13C9JR72 458 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 SLC33A1O00400 549 aaPredicted RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 SLC17A2O00624 439 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 MCF2LO15068 1137 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 CTDSPLO15194 276 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 DKC1O60832 514 aaKnown RBP eCLIP0.27□□□□□ -2.37
VPS35-212ENST00000640313 CSO75390 466 aaKnown RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 CLN5O75503 358 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 DUSP14O95147 198 aaKnown RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 STBD1O95210 358 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 OR6A2O95222 327 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 LUC7L3O95232 432 aaKnown RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 LYPD3O95274 346 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 GJB5O95377 273 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 SLC16A8O95907 504 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 OAS1P00973 400 aaKnown RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 CALCAP01258 141 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 IGHV3-23P01764 117 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 NUDT17P0C025 328 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 SUPT20HL2P0C7V6 817 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 LAMP1P11279 417 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 SKILP12757 684 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 MYL6BP14649 208 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ANPEPP15144 967 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 PDGFRAP16234 1089 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 GPX3P22352 226 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 EEF1DP29692 281 aaKnown RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 CCND3P30281 292 aaPredicted RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 MAT2AP31153 395 aaKnown RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 RPL9P32969 192 aaKnown RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 SPRP35270 261 aaPredicted RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 KRT20P35900 424 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 TRIM23P36406 574 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 GP5P40197 560 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ID1P41134 155 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 PRKCIP41743 596 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 FRKP42685 505 aaPredicted RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 SLC1A3P43003 542 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 MAGEB1P43366 347 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 OR1D4P47884 311 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 KCNJ1P48048 391 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 GPC3P51654 580 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ZNF131P52739 623 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 RIPK4P57078 832 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ERVPABLB-1P60509 514 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 GNB2P62879 340 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 PAX2Q02962 417 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ZNF33BQ06732 778 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 SLC3A1Q07837 685 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 TEFQ10587 303 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 CEACAM7Q14002 265 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 KCTD2Q14681 263 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ABRAXAS2Q15018 415 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 KIAA0040Q15053 153 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 SPHARQ15513 63 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 OR1C1Q15619 314 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 PRR4Q16378 134 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ECSCRQ19T08 205 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 TYSND1Q2T9J0 566 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 WSCD2Q2TBF2 565 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD55Q3KP44 614 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 CCDC14Q49A88 953 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 SBK1Q52WX2 424 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 UNC50Q53HI1 259 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 PAN3Q58A45 887 aaKnown RBP0.27□□□□□ -2.37
VPS35-212ENST00000640313 LRRC73Q5JTD7 316 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 C1orf141Q5JVX7 400 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 ACER2Q5QJU3 275 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 DDX59Q5T1V6 619 aaKnown RBP eCLIP0.27□□□□□ -2.37
VPS35-212ENST00000640313 CFAP58Q5T655 872 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 DCAF12Q5T6F0 453 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 SEL1L2Q5TEA6 688 aa0.27□□□□□ -2.37
VPS35-212ENST00000640313 AGAP6Q5VW22 663 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms