RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 LAPTM4AQ15012 233 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 KCNJ8Q15842 424 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TSTQ16762 297 aaKnown RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 UGT8Q16880 541 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 EXOC3L2Q2M3D2 409 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 HKDC1Q2TB90 917 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 KLHL22Q53GT1 634 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ARHGAP15Q53QZ3 475 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 DDI2Q5TDH0 399 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 AGAP6Q5VW22 663 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 BHLHB9Q6PI77 547 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CRTC1Q6UUV9 634 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MBOAT1Q6ZNC8 495 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MAML2Q8IZL2 1156 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TRAM1L1Q8N609 369 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SLC5A8Q8N695 610 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 NAT16Q8N8M0 369 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 FIBINQ8TAL6 211 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 POF1BQ8WVV4 589 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GGHQ92820 318 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MYEOVQ96EZ4 313 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF486Q96H40 463 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF514Q96K75 400 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 AGAP4Q96P64 663 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CASD1Q96PB1 797 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TRNT1Q96Q11 434 aaKnown RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 FAM129BQ96TA1 746 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MTERF1Q99551 399 aaKnown RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MGLLQ99685 303 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ARHGAP9Q9BRR9 750 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CCM2Q9BSQ5 444 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TNKS2Q9H2K2 1166 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CHRDQ9H2X0 955 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TMEM38AQ9H6F2 299 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 NEUROD4Q9HD90 331 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PRMT8Q9NR22 394 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MS4A12Q9NXJ0 267 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CFAP97Q9P2B7 532 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ATP6V1HQ9UI12 483 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PPT2Q9UMR5 302 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PCDHGA6Q9Y5G7 932 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PIKFYVEQ9Y2I7 2098 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 KCNE1BA0A087WTH5 132 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 A0A1W2PRB8 838 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TRBC2A0A5B9 178 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 KIAA0513O60268 411 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PCDHGA12O60330 932 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 OR10H3O60404 316 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 UGT2B17O75795 530 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 STSP08842 583 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ADORA3P0DMS8 318 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 LAMP1P11279 417 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GSTM3P21266 225 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 UQCRC2P22695 453 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CCR7P32248 378 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 HSD17B2P37059 387 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CASP3P42574 277 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CDKN2CP42773 168 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 DCDC1P59894 354 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CYP4F2P78329 520 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TP53BP2Q13625 1128 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 DOC2AQ14183 400 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MBTPS1Q14703 1052 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ANKRD39Q53RE8 183 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 LCN1P1Q5VSP4 162 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PLAG1Q6DJT9 500 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 REEP3Q6NUK4 255 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GDPD4Q6W3E5 623 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 RRM2BQ7LG56 351 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TMPRSS11BQ86T26 416 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MMAAQ8IVH4 418 aaKnown RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PARP16Q8N5Y8 322 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 AQP11Q8NBQ7 271 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 OR10Q1Q8NGQ4 319 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 NFKBIDQ8NI38 313 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 WDR48Q8TAF3 677 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PYCR2Q96C36 320 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SLC38A2Q96QD8 506 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SNX18Q96RF0 628 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CDCA4Q9BXL8 241 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 NDEL1Q9GZM8 345 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ANKRA2Q9H9E1 313 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ZBTB20Q9HC78 741 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 NEK6Q9HC98 313 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MYNNQ9NPC7 610 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 MARCH5Q9NX47 278 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 VNN3Q9NY84 501 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TAS2R9Q9NYW1 312 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SNX8Q9Y5X2 465 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 A8MX80 341 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 H3BM21 787 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GFYI3L273 518 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PSMD11O00231 422 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 FOXE1O00358 373 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CHST10O43529 356 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PI15O43692 258 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GUCY1B2O75343 617 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 VIPP01282 170 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 KLKB1P03952 638 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms