RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ARHGEF17Q96PE2 2063 aaPredicted RBP20.88■□□□□ 0.93
PNKP-220ENST00000627232 OR6C74A6NCV1 312 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 VILLO15195 856 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 PROM1O43490 865 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 SH3BP5O60239 455 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 SLC35G6P0C7Q6 338 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 POLR2CP19387 275 aaPredicted RBP20.88■□□□□ 0.93
PNKP-220ENST00000627232 RRM2P31350 389 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 GPC1P35052 558 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 NCBP2P52298 156 aaKnown RBP eCLIP20.88■□□□□ 0.93
PNKP-220ENST00000627232 TNFAIP8L2Q6P589 184 aaPredicted RBP20.88■□□□□ 0.93
PNKP-220ENST00000627232 FIGLAQ6QHK4 219 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 SETD9Q8NE22 299 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 SLC38A5Q8WUX1 472 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 SLC35G5Q96KT7 338 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 OR2A5Q96R48 311 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 GIMAP4Q9NUV9 329 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 FBXW2Q9UKT8 454 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 DUSP12Q9UNI6 340 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 ENTPD4Q9Y227 616 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 COMMD3-BMI1R4GMX3 469 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 HSPE1-MOB4S4R3N1 261 aa20.88■□□□□ 0.93
PNKP-220ENST00000627232 URADA6NGE7 173 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 C2orf74A8MZ97 194 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 HMGN4O00479 90 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 BCKDKO14874 412 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 DNAJB5O75953 348 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 SMIM10L1P0DMW3 83 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 MAGP20916 626 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 GSTT1P30711 240 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 ANXA11P50995 505 aaKnown RBP20.87■□□□□ 0.93
PNKP-220ENST00000627232 BLKP51451 505 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 RAB8AP61006 207 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 TP53BP2Q13625 1128 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 KEAP1Q14145 624 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 CEBPEQ15744 281 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 FCRL6Q6DN72 434 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 BHLHB9Q6PI77 547 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 TRIM73Q86UV7 250 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 UTP15Q8TED0 518 aaKnown RBP20.87■□□□□ 0.93
PNKP-220ENST00000627232 SMIM10Q96HG1 83 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 TCEAL2Q9H3H9 227 aaPredicted RBP20.87■□□□□ 0.93
PNKP-220ENST00000627232 PILRAQ9UKJ1 303 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 RAB23Q9ULC3 237 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 PCDHGA8Q9Y5G5 932 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 LYVE1Q9Y5Y7 322 aa20.87■□□□□ 0.93
PNKP-220ENST00000627232 GSAPA4D1B5 854 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 TMEM247A6NEH6 219 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 PGRMC2O15173 223 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 MITFO75030 526 aaPredicted RBP20.86■□□□□ 0.93
PNKP-220ENST00000627232 BCHEP06276 602 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 CSNK2A2P19784 350 aaPredicted RBP20.86■□□□□ 0.93
PNKP-220ENST00000627232 ELK4P28324 431 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 ESRRGP62508 458 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 RPS26P62854 115 aaKnown RBP20.86■□□□□ 0.93
PNKP-220ENST00000627232 BTN3A2P78410 334 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 COL13A1Q5TAT6 717 aaPredicted RBP20.86■□□□□ 0.93
PNKP-220ENST00000627232 TAF8Q7Z7C8 310 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 RBM12BQ8IXT5 1001 aaKnown RBP20.86■□□□□ 0.93
PNKP-220ENST00000627232 KCT2Q8NC54 265 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 CHDHQ8NE62 594 aaPredicted RBP20.86■□□□□ 0.93
PNKP-220ENST00000627232 OR10G6Q8NH81 332 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 FBLIM1Q8WUP2 373 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 KLHDC7BQ96G42 594 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 TMEM19Q96HH6 336 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 ORAI3Q9BRQ5 295 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 CHRDQ9H2X0 955 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 KIF17Q9P2E2 1029 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 MRPS17Q9Y2R5 130 aaKnown RBP20.86■□□□□ 0.93
PNKP-220ENST00000627232 CEPT1Q9Y6K0 416 aa20.86■□□□□ 0.93
PNKP-220ENST00000627232 A8MVJ9 347 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 TNFRSF11BO00300 401 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 FESP07332 822 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 ZNF888P0CJ79 500 aaPredicted RBP20.85■□□□□ 0.93
PNKP-220ENST00000627232 CTSEP14091 401 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 KHKP50053 298 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 SH3BGRP55822 239 aaPredicted RBP20.85■□□□□ 0.93
PNKP-220ENST00000627232 GABARAPL2P60520 117 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 ISL1P61371 349 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 LAPTM4AQ15012 233 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 SUZ12Q15022 739 aaKnown RBP20.85■□□□□ 0.93
PNKP-220ENST00000627232 C6orf141Q5SZD1 244 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 C18orf63Q68DL7 685 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 ALDH16A1Q8IZ83 802 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 CAMKVQ8NCB2 501 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 OR56A1Q8NGH5 318 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 OR4C15Q8NGM1 316 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 SUN3Q8TAQ9 357 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 SLC37A2Q8TED4 501 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 GIPC3Q8TF64 312 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 RASSF5Q8WWW0 418 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 RSC1A1Q92681 617 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 CNRIP1Q96F85 164 aaPredicted RBP20.85■□□□□ 0.93
PNKP-220ENST00000627232 SERINC2Q96SA4 455 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 MAPKAP1Q9BPZ7 522 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 SERHL2Q9H4I8 314 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 PRDM9Q9NQV7 894 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 KRT84Q9NSB2 600 aa20.85■□□□□ 0.93
PNKP-220ENST00000627232 ZCCHC3Q9NUD5 404 aaKnown RBP20.85■□□□□ 0.93
PNKP-220ENST00000627232 EXD2Q9NVH0 621 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms