RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MAN2A2P49641 1150 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 ZNF91Q05481 1191 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 MGAT3Q09327 533 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 ZNF740Q8NDX6 193 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 C16orf78Q8WTQ4 265 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 APH1BQ8WW43 257 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 SLC35G5Q96KT7 338 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 ZNF717Q9BY31 904 aaPredicted RBP12.02□□□□□ -0.48
LIG1-221ENST00000613670 TAC3Q9UHF0 121 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 BTNL2Q9UIR0 455 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 MGAT4BQ9UQ53 548 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 SH3D21A4FU49 640 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 CD8B2A6NJW9 211 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 CENPBD1B2RD01 187 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 PITPNM1O00562 1244 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 PLD2O14939 933 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 ETHE1O95571 254 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 CD8BP10966 210 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 OSMP13725 252 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 DUSP7Q16829 419 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 VWA5B2Q8N398 1253 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 L3MBTL4Q8NA19 623 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 RASSF5Q8WWW0 418 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 QRFPRQ96P65 431 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 F2RL3Q96RI0 385 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 GABARAPL1Q9H0R8 117 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 CLEC4EQ9ULY5 219 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 TMEM202A6NGA9 273 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 CPSF4LA6NMK7 179 aaKnown RBP12.02□□□□□ -0.49
LIG1-221ENST00000613670 ARHGEF15O94989 841 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 CLTBP09497 229 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 MPC1LP0DKB6 136 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 C8orf89P0DMQ9 161 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 APEX1P27695 318 aaKnown RBP12.02□□□□□ -0.49
LIG1-221ENST00000613670 HOXD10P28358 340 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 CSNK1DP48730 415 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 CDH11P55287 796 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 MAP4K2Q12851 820 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 LASP1Q14847 261 aaKnown RBP12.02□□□□□ -0.49
LIG1-221ENST00000613670 BAK1Q16611 211 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 FAHD1Q6P587 224 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 PLEKHM3Q6ZWE6 761 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 AIF1LQ9BQI0 150 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 SPATA5L1Q9BVQ7 753 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 OR51V1Q9H2C8 321 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 QPCTLQ9NXS2 382 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 FBXW2Q9UKT8 454 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 SLC6A14Q9UN76 642 aa12.02□□□□□ -0.49
LIG1-221ENST00000613670 H3BNC9 293 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 CCL16O15467 120 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 CAPN5O15484 640 aaPredicted RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 LEFTY1O75610 366 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 RAB36O95755 333 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 SLC9A3P48764 834 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 RGS8P57771 180 aaPredicted RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 DCDC1P59894 354 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 PFN3P60673 137 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 MAB21L1Q13394 359 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 FXNQ16595 210 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 ALG1LQ6GMV1 187 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 C6orf120Q7Z4R8 191 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 TMCO2Q7Z6W1 182 aaPredicted RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 IFNL1Q8IU54 200 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 OR4K5Q8NGD3 323 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 OR52E4Q8NGH9 312 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 NEIL3Q8TAT5 605 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 UBTD2Q8WUN7 234 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 SLC5A11Q8WWX8 675 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 DEDD2Q8WXF8 326 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 KLF16Q9BXK1 252 aaPredicted RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 C11orf54Q9H0W9 315 aaPredicted RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 ASIC5Q9NY37 505 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 ZNF224Q9NZL3 707 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 YARS2Q9Y2Z4 477 aaKnown RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 C2orf92A0A1B0GVN3 265 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 UNCXA6NJT0 531 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 SMLR1H3BR10 107 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 RB1P06400 928 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 C1GALT1C1LP0DN25 315 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 IL1RNP18510 177 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 LHCGRP22888 699 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 LARS2Q15031 903 aaKnown RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 ZNF791Q3KP31 576 aaPredicted RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 PRAMEF14Q5SWL7 426 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 PRAMEF13Q5VWM6 474 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 GRHL2Q6ISB3 625 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 SYNPOQ8N3V7 929 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 PIGKQ92643 395 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 BHLHE41Q9C0J9 482 aaPredicted RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 ASAH2Q9NR71 780 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 PADI2Q9Y2J8 665 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 LOC102723532A0A0G2JNH3 316 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 HMX3A6NHT5 357 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 I3L521 148 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 FRS3O43559 492 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 GPR37L1O60883 481 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 F11P03951 625 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 CYBAP13498 195 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 SMSP52788 366 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 TATDN3Q17R31 274 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms