RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 NCBP2P52298 156 aaKnown RBP eCLIP16.66■□□□□ 0.264e-7■□□□□ 8.2
SHKBP1-224ENST00000600718 EMP3P54852 163 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 HSPB3Q12988 150 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 FADDQ13158 208 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 FAM53BQ14153 422 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 CEBPEQ15744 281 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 OR52E8Q6IFG1 317 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 TMEM71Q6P5X7 295 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 LRRC74BQ6ZQY2 392 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 ZZZ3Q8IYH5 903 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 PQLC1Q8N2U9 271 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 D2HGDHQ8N465 521 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 CANT1Q8WVQ1 401 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 SLCO4A1Q96BD0 722 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 CNRIP1Q96F85 164 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 SLC41A2Q96JW4 573 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 C10orf90Q96M02 699 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 CHST8Q9H2A9 424 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 ARRDC1-AS1Q9H2J1 176 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 SIRT3Q9NTG7 399 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 ARMC1Q9NVT9 282 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 TMEM9Q9P0T7 183 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 CACNA1EQ15878 2313 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 HYKKA2RU49 373 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 FITM1A5D6W6 292 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 ZNF860A6NHJ4 632 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 KHNYNO15037 678 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 TOX3O15405 576 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 CREG1O75629 220 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 IL10P22301 178 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 MVDP53602 400 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 OLR1P78380 273 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 VMACQ2NL98 169 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 SNAP47Q5SQN1 464 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 PERM1Q5SV97 790 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 TMTC4Q5T4D3 741 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 ANGPTL8Q6UXH0 198 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 ADGRG5Q8IZF4 528 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 CA13Q8N1Q1 262 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 NEURL3Q96EH8 262 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 ZNF681Q96N22 645 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 DPH2Q9BQC3 489 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 YIPF3Q9GZM5 350 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 CLK4Q9HAZ1 481 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 GPATCH2Q9NW75 528 aa16.66■□□□□ 0.26
SHKBP1-224ENST00000600718 SDK1Q7Z5N4 2213 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 RNF103-CHMP3A0A140T963 221 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 GALR2O43603 387 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 RETP07949 1114 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 GPC1P35052 558 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 CRATP43155 626 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 SEPHS1P49903 392 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 CDK9P50750 372 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 DUSP3P51452 185 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 NUBP1P53384 320 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 VEZF1Q14119 521 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 GRM7Q14831 915 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 ADRM1Q16186 407 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 INAVAQ3KP66 663 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 SPDYE7PQ495Y7 208 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 AP1ARQ63HQ0 302 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 SAXO2Q658L1 398 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 PTOV1Q86YD1 416 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 CCDC116Q8IYX3 515 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 OR4K14Q8NGD5 310 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 OR9A4Q8NGU2 314 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 OR5AK3PQ8NH89 298 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 FAM162AQ96A26 154 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 NUDT22Q9BRQ3 303 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 SEMA3GQ9NS98 782 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 IRAK4Q9NWZ3 460 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 ANAPC2Q9UJX6 822 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 ACSL6Q9UKU0 697 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 RAB23Q9ULC3 237 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 PCDH15Q96QU1 1955 aa16.65■□□□□ 0.26
SHKBP1-224ENST00000600718 SGK494L7N484 410 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 CYR61O00622 381 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 MSL3P1P0C860 447 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 FEN1P39748 380 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 VHLP40337 213 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 CCT3P49368 545 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 RAB38P57729 211 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 ZC3H14Q6PJT7 736 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 TTC29Q8NA56 475 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 SUN3Q8TAQ9 357 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 NRG4Q8WWG1 115 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 CSF3RQ99062 836 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 DPYSL5Q9BPU6 564 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 SPRTNQ9H040 489 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 FAF1Q9UNN5 650 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 PI4KAP42356 2102 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 ANKRD33BA6NCL7 494 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 HNRNPRO43390 633 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 FOXS1O43638 330 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 TNFRSF21O75509 655 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 NSA2O95478 260 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 CPNE6O95741 557 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 ZNF883P0CG24 379 aa16.64■□□□□ 0.25
SHKBP1-224ENST00000600718 C8orf89P0DMQ9 161 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms