RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MED26O95402 600 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 OTCP00480 354 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 CHRNGP07510 517 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 FGF4P08620 206 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 TSPAN8P19075 237 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 FBLP22087 321 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 HRH2P25021 359 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 CMPK1P30085 196 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 EMP2P54851 167 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 TSTA3Q13630 321 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 TUBA3CQ13748 450 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 OR1C1Q15619 314 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 SF1Q15637 639 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 DEFB113Q30KQ7 82 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 GGTA1PQ4G0N0 100 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 THEMIS2Q5TEJ8 643 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 LIPJQ5W064 366 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF425Q6IV72 752 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 TUBA3EQ6PEY2 450 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 NXPE4Q6UWF7 544 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 PAMR1Q6UXH9 720 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 GALNTL5Q7Z4T8 443 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 C17orf64Q86WR6 236 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 CDC20BQ86Y33 519 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 MDS2Q8NDY4 140 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 ACAT2Q9BWD1 397 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 PELI2Q9HAT8 420 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 EML4Q9HC35 981 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 SLC24A3Q9HC58 644 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 TNFRSF12AQ9NP84 129 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 ABCF3Q9NUQ8 709 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 L3MBTL1Q9Y468 752 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 KCNE1BA0A087WTH5 132 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 FAM171A2A8MVW0 826 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 INAFM1C9JVW0 142 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 ESRRBO95718 433 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 C1GALT1C1LP0DN25 315 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 CDH1P12830 882 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 CD22P20273 847 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 CCNG1P51959 295 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 PPP2R2BQ00005 443 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 CHIT1Q13231 466 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 DOC2AQ14183 400 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 CATSPEREQ5SY80 951 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 TTC19Q6DKK2 380 aaPredicted RBP13□□□□□ -0.33
SHKBP1-218ENST00000598907 SPINK14Q6IE38 97 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 LETMD1Q6P1Q0 360 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 GPRIN3Q6ZVF9 776 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 CAMKMTQ7Z624 323 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 MILR1Q7Z6M3 343 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 FAM98AQ8NCA5 519 aaKnown RBP13□□□□□ -0.33
SHKBP1-218ENST00000598907 OR4F6Q8NGB9 312 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 FAM57AQ8TBR7 257 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 RND1Q92730 232 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 ZUFSPQ96AP4 578 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 MBD6Q96DN6 1003 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 PTCD3Q96EY7 689 aaKnown RBP13□□□□□ -0.33
SHKBP1-218ENST00000598907 SEC16BQ96JE7 1060 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 C7orf26Q96N11 449 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF317Q96PQ6 595 aaPredicted RBP13□□□□□ -0.33
SHKBP1-218ENST00000598907 SARGQ9BW04 601 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 MRPS30Q9NP92 439 aaKnown RBP13□□□□□ -0.33
SHKBP1-218ENST00000598907 MID1IP1Q9NPA3 183 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 SLCO1B3Q9NPD5 702 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 RASSF1Q9NS23 344 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 TMEM184CQ9NVA4 438 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 TRPS1Q9UHF7 1281 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 RAP2CQ9Y3L5 183 aa13□□□□□ -0.33
SHKBP1-218ENST00000598907 OR2A25A4D2G3 310 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 RNF212BA8MTL3 300 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 H7BY64 318 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 OR4F21O95013 312 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 CLDN9O95484 217 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 HSPA4LO95757 839 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 RAF1P04049 648 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 ENO1P06733 434 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 HEXBP07686 556 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 CD46P15529 392 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 PTGS2P35354 604 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 HNF4AP41235 474 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 VSX2P58304 361 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 OC90Q02509 493 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 IRF8Q02556 426 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 RELAQ04206 551 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 KEAP1Q14145 624 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 XKR6Q5GH73 641 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 RNFT1Q5M7Z0 435 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 YOD1Q5VVQ6 348 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 TMEM211Q6ICI0 200 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 GRHL2Q6ISB3 625 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 CHSY3Q70JA7 882 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 PAQR7Q86WK9 346 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 TMEM178AQ8NBL3 297 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 ATP6V1E2Q96A05 226 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 PRAP1Q96NZ9 151 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 CDK15Q96Q40 435 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 PLCD4Q9BRC7 762 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 UTP23Q9BRU9 249 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 DPH7Q9BTV6 452 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms