RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ZBTB9Q96C00 473 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 VMP1Q96GC9 406 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 MECRQ9BV79 373 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 ACPTQ9BZG2 426 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 SHCBP1LQ9BZQ2 653 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.93□□□□□ -0.34
UPF1-205ENST00000598209 CENPHQ9H3R5 247 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 CDCP1Q9H5V8 836 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 TNFRSF12AQ9NP84 129 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 TEX10Q9NXF1 929 aaPredicted RBP12.93□□□□□ -0.34
UPF1-205ENST00000598209 ABI3Q9P2A4 366 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 PPIEQ9UNP9 301 aaKnown RBP12.93□□□□□ -0.34
UPF1-205ENST00000598209 CLCA3PQ9Y6N3 262 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 NBASA2RRP1 2371 aa12.93□□□□□ -0.34
UPF1-205ENST00000598209 OR5H15A6NDH6 313 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 WASHC1A8K0Z3 465 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 C17orf105B2RV13 164 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 TYROBPO43914 113 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 CRCPO75575 148 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 WISP1O95388 367 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 TNNI3P19429 210 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 STT3AP46977 705 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 ST13P50502 369 aaKnown RBP12.92□□□□□ -0.34
UPF1-205ENST00000598209 GPR143P51810 404 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 HMGCS1Q01581 520 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 BIKQ13323 160 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 OR52E8Q6IFG1 317 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 CROCCP2Q86T23 111 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 RPS19BP1Q86WX3 136 aaKnown RBP12.92□□□□□ -0.34
UPF1-205ENST00000598209 LGI4Q8N135 537 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 CISD2Q8N5K1 135 aaKnown RBP12.92□□□□□ -0.34
UPF1-205ENST00000598209 MORN4Q8NDC4 146 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 OR1N1Q8NGS0 311 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 PTPMT1Q8WUK0 201 aaPredicted RBP12.92□□□□□ -0.34
UPF1-205ENST00000598209 CHTF18Q8WVB6 975 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 DGAT2Q96PD7 388 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 DEFB126Q9BYW3 111 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 MAP10Q9P2G4 905 aa12.92□□□□□ -0.34
UPF1-205ENST00000598209 ZNF223Q9UK11 482 aaPredicted RBP12.92□□□□□ -0.34
UPF1-205ENST00000598209 SPENQ96T58 3664 aaKnown RBP12.91□□□□□ -0.34
UPF1-205ENST00000598209 TRAV17A0A0B4J275 112 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 SERTM1A2A2V5 107 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 GABRR3A8MPY1 467 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 PGRMC2O15173 223 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 CTIFO43310 598 aaKnown RBP12.91□□□□□ -0.34
UPF1-205ENST00000598209 GUCY1B2O75343 617 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 GPR75O95800 540 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 DDAH2O95865 285 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 COX7A2P14406 83 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 ALOX15P16050 662 aaPredicted RBP12.91□□□□□ -0.34
UPF1-205ENST00000598209 SERPINB3P29508 390 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 MLF1P58340 268 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 PLIN5Q00G26 463 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 NDUFAF5Q5TEU4 345 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 LRIG3Q6UXM1 1119 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 EXOC3L1Q86VI1 746 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 SLC2A12Q8TD20 617 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 THAP3Q8WTV1 239 aaPredicted RBP12.91□□□□□ -0.34
UPF1-205ENST00000598209 SNRNP40Q96DI7 357 aaKnown RBP12.91□□□□□ -0.34
UPF1-205ENST00000598209 APIPQ96GX9 242 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 RBM18Q96H35 190 aaKnown RBP12.91□□□□□ -0.34
UPF1-205ENST00000598209 TRMOQ9BU70 441 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 OR8D2Q9GZM6 311 aa12.91□□□□□ -0.34
UPF1-205ENST00000598209 PRKNO60260 465 aaPredicted RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 NPHS1O60500 1241 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 ZFAND5O76080 213 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 UROSP10746 265 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 PIK3R1P27986 724 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 ETV4P43268 484 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 BTKQ06187 659 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 ACSM2AQ08AH3 577 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 TUBA3CQ13748 450 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 IMPG1Q17R60 797 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 SPIN4Q56A73 249 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 TNFAIP8L3Q5GJ75 292 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 SPDYAQ5MJ70 313 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 BEND6Q5SZJ8 279 aaPredicted RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 ACSM2BQ68CK6 577 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 CLEC6AQ6EIG7 209 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 RPUSD3Q6P087 351 aaKnown RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 TUBA3EQ6PEY2 450 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 ZCCHC23Q6ZST2 131 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 ATCAYQ86WG3 371 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 ST13P4Q8IZP2 240 aaPredicted RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 ARMC10Q8N2F6 343 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 ZNF321PQ8N8H1 164 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 SUN3Q8TAQ9 357 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 SREK1Q8WXA9 508 aaKnown RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 PPWD1Q96BP3 646 aaKnown RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 TM4SF18Q96CE8 201 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 C19orf60Q96EN9 201 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 UTP23Q9BRU9 249 aaKnown RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 PELOQ9BRX2 385 aaKnown RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 ASF1BQ9NVP2 202 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 ANKRD10Q9NXR5 420 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 MCM8Q9UJA3 840 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 NTNG1Q9Y2I2 539 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 PCDHA9Q9Y5H5 950 aa12.9□□□□□ -0.34
UPF1-205ENST00000598209 COPG1Q9Y678 874 aaKnown RBP12.9□□□□□ -0.34
UPF1-205ENST00000598209 HELZ2Q9BYK8 2649 aaKnown RBP12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms