RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 ZNF282Q9UDV7 671 aaPredicted RBP21.01■□□□□ 0.95
ATG4D-209ENST00000588857 CES1P1Q9UKY3 287 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 AP3M1Q9Y2T2 418 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 ZNF780BQ9Y6R6 833 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 MED19A0JLT2 244 aaPredicted RBP21■□□□□ 0.95
ATG4D-209ENST00000588857 PRORSD1PA6NEY8 169 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 WASHC1A8K0Z3 465 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 H0YIG0 161 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 AGRPO00253 132 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 SORBS2O94875 1100 aaKnown RBP21■□□□□ 0.95
ATG4D-209ENST00000588857 ZCCHC18P0CG32 403 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 HOXB9P17482 250 aaPredicted RBP21■□□□□ 0.95
ATG4D-209ENST00000588857 TCN1P20061 433 aaPredicted RBP21■□□□□ 0.95
ATG4D-209ENST00000588857 CSRP1P21291 193 aaKnown RBP21■□□□□ 0.95
ATG4D-209ENST00000588857 ALAS2P22557 587 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 CSTF2P33240 577 aaKnown RBP eCLIP21■□□□□ 0.95
ATG4D-209ENST00000588857 DTWD1Q8N5C7 304 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 ZFP28Q8NHY6 868 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 MVB12AQ96EY5 273 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 PHF12Q96QT6 1004 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 ECSITQ9BQ95 431 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 HCN3Q9P1Z3 774 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 CD300AQ9UGN4 299 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 NDOR1Q9UHB4 597 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 NEUROG3Q9Y4Z2 214 aa21■□□□□ 0.95
ATG4D-209ENST00000588857 EVPLLA8MZ36 301 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 RNH1P13489 461 aaKnown RBP20.99■□□□□ 0.95
ATG4D-209ENST00000588857 FRKP42685 505 aaPredicted RBP20.99■□□□□ 0.95
ATG4D-209ENST00000588857 EEFSECP57772 596 aaKnown RBP20.99■□□□□ 0.95
ATG4D-209ENST00000588857 SIM1P81133 766 aaPredicted RBP20.99■□□□□ 0.95
ATG4D-209ENST00000588857 ZFP36L1Q07352 338 aaKnown RBP20.99■□□□□ 0.95
ATG4D-209ENST00000588857 CCDC157Q569K6 752 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 PIP4P1Q86T03 277 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 SAMD14Q8IZD0 417 aaPredicted RBP20.99■□□□□ 0.95
ATG4D-209ENST00000588857 ADAMTS18Q8TE60 1221 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 AURKBQ96GD4 344 aaPredicted RBP20.99■□□□□ 0.95
ATG4D-209ENST00000588857 ALG2Q9H553 416 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 SLAMF7Q9NQ25 335 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 RARRES3Q9UL19 164 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 CDC14AQ9UNH5 594 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 ERVK-11Q9UQG0 969 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 POMPQ9Y244 141 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 CNOT1A5YKK6 2376 aaKnown RBP20.99■□□□□ 0.95
ATG4D-209ENST00000588857 SPTBN2O15020 2390 aa20.99■□□□□ 0.95
ATG4D-209ENST00000588857 CYR61O00622 381 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 ZNF749O43361 778 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 DNAJA2O60884 412 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 CSNK2A2P19784 350 aaPredicted RBP20.98■□□□□ 0.95
ATG4D-209ENST00000588857 LIPEQ05469 1076 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 HSPB3Q12988 150 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 ILKQ13418 452 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 SELPLGQ14242 412 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 MLC1Q15049 377 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 RBM44Q6ZP01 1051 aaKnown RBP20.98■□□□□ 0.95
ATG4D-209ENST00000588857 ZNF551Q7Z340 670 aaPredicted RBP20.98■□□□□ 0.95
ATG4D-209ENST00000588857 B3GNT8Q7Z7M8 397 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 METTL27Q8N6F8 245 aaPredicted RBP20.98■□□□□ 0.95
ATG4D-209ENST00000588857 FAM156AQ8NDB6 213 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 OR4K14Q8NGD5 310 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 TANKQ92844 425 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 CPPED1Q9BRF8 314 aaPredicted RBP20.98■□□□□ 0.95
ATG4D-209ENST00000588857 DENND2DQ9H6A0 471 aaPredicted RBP20.98■□□□□ 0.95
ATG4D-209ENST00000588857 NEUROD4Q9HD90 331 aa20.98■□□□□ 0.95
ATG4D-209ENST00000588857 SUCOQ9UBS9 1254 aaKnown RBP20.98■□□□□ 0.95
ATG4D-209ENST00000588857 A8MUI8 341 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 MYO1GB0I1T2 1018 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 CLIC1O00299 241 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 CEACAM1P13688 526 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 HSD17B1P14061 328 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 PPIBP23284 216 aaKnown RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 MPIP34949 423 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 MSX2P35548 267 aaPredicted RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 NOVA1P51513 510 aaKnown RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 NCBP2P52298 156 aaKnown RBP eCLIP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 E2F1Q01094 437 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 CYB5D1Q6P9G0 228 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 IFNEQ86WN2 208 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 AGBL5Q8NDL9 886 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 CNRIP1Q96F85 164 aaPredicted RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 AMDHD1Q96NU7 426 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 KCTD14Q9BQ13 255 aaPredicted RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 SLC7A5P2Q9GIP4 190 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 SIDT1Q9NXL6 827 aaKnown RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 DHCR7Q9UBM7 475 aaKnown RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 SRPK3Q9UPE1 567 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 MRPS33Q9Y291 106 aaKnown RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 SNX8Q9Y5X2 465 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 FAM227AF5H4B4 570 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 DSCR3O14972 297 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 C8orf89P0DMQ9 161 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 GPC1P35052 558 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 SOAT1P35610 550 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 FEN1P39748 380 aaKnown RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 GCGRP47871 477 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 GSK3BP49841 420 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 GAB1Q13480 694 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 TRIM25Q14258 630 aaKnown RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 KPNB1Q14974 876 aaKnown RBP20.97■□□□□ 0.95
ATG4D-209ENST00000588857 PRAMEF17Q5VTA0 474 aa20.97■□□□□ 0.95
ATG4D-209ENST00000588857 DEFB124Q8NES8 71 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms