RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 B4GALT2O60909 372 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 DNAJC8O75937 253 aaPredicted RBP23.64■■□□□ 1.37
SHMT1-207ENST00000580002 KCNH1O95259 989 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 PGM1P36871 562 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 BTG2P78543 158 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 MC2RQ01718 297 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 LCN10Q6JVE6 187 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 C16orf89Q6UX73 402 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 CCDC116Q8IYX3 515 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 OR4A15Q8NGL6 344 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 SUN3Q8TAQ9 357 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 ZNF681Q96N22 645 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 GLIPR2Q9H4G4 154 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 RMND5AQ9H871 391 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 EHD3Q9NZN3 535 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 LOXL2Q9Y4K0 774 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 TRBV5-3A0A0A0MS03 114 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 TGFBR3LH3BV60 316 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 POLR1CO15160 346 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-207ENST00000580002 FTH1P19P0C7X4 201 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 FGF5P12034 268 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 NQO1P15559 274 aaKnown RBP23.63■■□□□ 1.37
SHMT1-207ENST00000580002 SLC7A2P52569 658 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 MTPNP58546 118 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 GAB1Q13480 694 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 ANXA8L1Q5VT79 327 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 ZNF621Q6ZSS3 439 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 SLC15A3Q8IY34 581 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 C10orf111Q8N326 155 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 GID8Q9NWU2 228 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 BTNL2Q9UIR0 455 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 USP22Q9UPT9 525 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 CNOT1A5YKK6 2376 aaKnown RBP23.63■■□□□ 1.37
SHMT1-207ENST00000580002 A0A096LPI6 279 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 A0A1B0GX78 115 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 H0YIG0 161 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 FRKP42685 505 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-207ENST00000580002 XCR1P46094 333 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 CDK9P50750 372 aaKnown RBP23.63■■□□□ 1.37
SHMT1-207ENST00000580002 EFNA3P52797 238 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 LIMK1P53667 647 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 ARSFP54793 590 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 FOLH1Q04609 750 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 CEACAM7Q14002 265 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 LRIF1Q5T3J3 769 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 RHBDD2Q6NTF9 364 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 MSANTD1Q6ZTZ1 278 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 FAM156AQ8NDB6 213 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 COL26A1Q96A83 441 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 ANKRD9Q96BM1 317 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-207ENST00000580002 MS4A12Q9NXJ0 267 aa23.63■■□□□ 1.37
SHMT1-207ENST00000580002 CEP250Q9BV73 2442 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 RNH1P13489 461 aaKnown RBP23.62■■□□□ 1.37
SHMT1-207ENST00000580002 TLX1P31314 330 aaPredicted RBP23.62■■□□□ 1.37
SHMT1-207ENST00000580002 MANFP55145 182 aaKnown RBP23.62■■□□□ 1.37
SHMT1-207ENST00000580002 DMTNQ08495 405 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 HSPB3Q12988 150 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 DNAL1Q4LDG9 190 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 COX15Q7KZN9 410 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 TMEM125Q96AQ2 219 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 CLIP3Q96DZ5 547 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 AMDHD1Q96NU7 426 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 GBP5Q96PP8 586 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 SLC7A5P2Q9GIP4 190 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 PIF1Q9H611 641 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 CXorf36Q9H7Y0 433 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 ZNF304Q9HCX3 659 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 SLC39A1Q9NY26 324 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 ADA2Q9NZK5 511 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 ACSL6Q9UKU0 697 aa23.62■■□□□ 1.37
SHMT1-207ENST00000580002 MYO1GB0I1T2 1018 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 NME4O00746 187 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 XKP51811 444 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 MAPK10P53779 464 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 CASP9P55211 416 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 LTB4RQ15722 352 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 RUNDC3AQ59EK9 446 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 VWA2Q5GFL6 755 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 RAB11FIP2Q7L804 512 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 HPS6Q86YV9 775 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 OR5AK3PQ8NH89 298 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 ZNF764Q96H86 408 aaPredicted RBP23.61■■□□□ 1.37
SHMT1-207ENST00000580002 ANKRD27Q96NW4 1050 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 BBS4Q96RK4 519 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 CMKLR1Q99788 373 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 ANKRA2Q9H9E1 313 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 TMEM181Q9P2C4 612 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 TRPC4Q9UBN4 977 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 NIPSNAP3AQ9UFN0 247 aaPredicted RBP23.61■■□□□ 1.37
SHMT1-207ENST00000580002 KNTC1P50748 2209 aa23.61■■□□□ 1.37
SHMT1-207ENST00000580002 TEX51A0A1B0GUA7 166 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 DKK1O94907 266 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 ANP32DO95626 131 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 SOX11P35716 441 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 TRPC1P48995 793 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 NCBP2P52298 156 aaKnown RBP eCLIP23.6■■□□□ 1.371e-6■■□□□ 14.2
SHMT1-207ENST00000580002 IL11RAQ14626 422 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 OR52E8Q6IFG1 317 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 PRSS58Q8IYP2 241 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 VPS37AQ8NEZ2 397 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms