RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TMEM233B4DJY2 109 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 HDAC3O15379 428 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 NKX2-8O15522 239 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 PCDH7O60245 1069 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 KLHL41O60662 606 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 SEC22BO75396 215 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 NR2F6P10588 404 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 OTX2P32243 289 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 SERTAD2Q14140 314 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 NR6A1Q15406 480 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 ATP6AP1LQ52LC2 224 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 FHL5Q5TD97 284 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 SCIMPQ6UWF3 145 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 IKBIPQ70UQ0 350 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 LAPTM4BQ86VI4 370 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 SCUBE1Q8IWY4 988 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 SSC4DQ8WTU2 575 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 APIPQ96GX9 242 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 PTCHD1Q96NR3 888 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 SORBS1Q9BX66 1292 aaKnown RBP19.33■□□□□ 0.68
VPS53-210ENST00000571456 RPF2Q9H7B2 306 aaKnown RBP19.33■□□□□ 0.68
VPS53-210ENST00000571456 FBXW2Q9UKT8 454 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 HS3ST3B1Q9Y662 390 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 SCN2AQ99250 2005 aa19.33■□□□□ 0.68
VPS53-210ENST00000571456 CSMD1Q96PZ7 3565 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 LSM1O15116 133 aaKnown RBP19.32■□□□□ 0.68
VPS53-210ENST00000571456 TMPRSS11DO60235 418 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 B4GALT2O60909 372 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 LINC00032P0C843 101 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 DRD2P14416 443 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 HNRNPH2P55795 449 aaKnown RBP19.32■□□□□ 0.68
VPS53-210ENST00000571456 ZNF763Q0D2J5 394 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 HEPACAMQ14CZ8 416 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 KIAA0040Q15053 153 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 TERF2Q15554 542 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 NSDHLQ15738 373 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 OR52E8Q6IFG1 317 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 PPP1R32Q7Z5V6 425 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 WDR75Q8IWA0 830 aaKnown RBP19.32■□□□□ 0.68
VPS53-210ENST00000571456 PRSS58Q8IYP2 241 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 FAM9CQ8IZT9 166 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 FCRL1Q96LA6 429 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 PELOQ9BRX2 385 aaKnown RBP19.32■□□□□ 0.68
VPS53-210ENST00000571456 P4HTMQ9NXG6 502 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 PSME2Q9UL46 239 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 ATG4BQ9Y4P1 393 aa19.32■□□□□ 0.68
VPS53-210ENST00000571456 IGKV3D-11A0A0A0MRZ8 115 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 DNAJB6O75190 326 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 SKAP2O75563 359 aaPredicted RBP19.31■□□□□ 0.68
VPS53-210ENST00000571456 JRKO75564 520 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 ANXA4P09525 319 aaPredicted RBP19.31■□□□□ 0.68
VPS53-210ENST00000571456 ATXN8OSP0DMR3 200 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 ICAM2P13598 275 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 DDX5P17844 614 aaKnown RBP19.31■□□□□ 0.68
VPS53-210ENST00000571456 POU3F2P20265 443 aaPredicted RBP19.31■□□□□ 0.68
VPS53-210ENST00000571456 KLRB1Q12918 225 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 SLC13A2Q13183 592 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 LACTB2Q53H82 288 aaPredicted RBP19.31■□□□□ 0.68
VPS53-210ENST00000571456 SHISA6Q6ZSJ9 500 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 NDUFAF7Q7L592 441 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 APLFQ8IW19 511 aaPredicted RBP19.31■□□□□ 0.68
VPS53-210ENST00000571456 SAMD14Q8IZD0 417 aaPredicted RBP19.31■□□□□ 0.68
VPS53-210ENST00000571456 FAM47BQ8NA70 645 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 ABHD17AQ96GS6 310 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 TUBB6Q9BUF5 446 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 ZNF395Q9H8N7 513 aaPredicted RBP19.31■□□□□ 0.68
VPS53-210ENST00000571456 EHD3Q9NZN3 535 aa19.31■□□□□ 0.68
VPS53-210ENST00000571456 TCRBV16S1A1N1A0A5B0 115 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 SOCS6O14544 535 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 CDC123O75794 336 aaPredicted RBP19.3■□□□□ 0.68
VPS53-210ENST00000571456 TGDSO95455 350 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 HPP00738 406 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 PRKAR1AP10644 381 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 ASMTP46597 345 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 UQCRFS1P47985 274 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 MLLT10P55197 1068 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 IGLV3-21P80748 117 aaPredicted RBP19.3■□□□□ 0.68
VPS53-210ENST00000571456 BTKQ06187 659 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 STX4Q12846 297 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 NDUFAF5Q5TEU4 345 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 ZNF787Q6DD87 383 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 NOXRED1Q6NXP6 359 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 KIRREL2Q6UWL6 708 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 CPEB2Q7Z5Q1 589 aaKnown RBP19.3■□□□□ 0.68
VPS53-210ENST00000571456 OR11G2Q8NGC1 345 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 OR2T11Q8NH01 316 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 TM4SF18Q96CE8 201 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 TUBGCP3Q96CW5 907 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 RBCK1Q9BYM8 510 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 ZNF700Q9H0M5 742 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 MEAF6Q9HAF1 191 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 MYNNQ9NPC7 610 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 MAPRE3Q9UPY8 281 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 PCDHA9Q9Y5H5 950 aa19.3■□□□□ 0.68
VPS53-210ENST00000571456 OTOGQ6ZRI0 2925 aa19.29■□□□□ 0.68
VPS53-210ENST00000571456 A0A1W2PR48 441 aa19.29■□□□□ 0.68
VPS53-210ENST00000571456 FAM227AF5H4B4 570 aa19.29■□□□□ 0.68
VPS53-210ENST00000571456 PRPS2P11908 318 aa19.29■□□□□ 0.68
VPS53-210ENST00000571456 ELAVL4P26378 380 aaKnown RBP19.29■□□□□ 0.68
VPS53-210ENST00000571456 SOX8P57073 446 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms