RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ALOXE3Q9BYJ1 711 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 C15orf41Q9Y2V0 281 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 YLPM1P49750 1951 aaKnown RBP16.44■□□□□ 0.22
CLK3-227ENST00000570296 GOLGA6L9A6NEM1 432 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 EIF3FO00303 357 aaPredicted RBP16.44■□□□□ 0.22
CLK3-227ENST00000570296 HS3ST1O14792 307 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 OGNP20774 298 aaKnown RBP16.44■□□□□ 0.22
CLK3-227ENST00000570296 SRSF2Q01130 221 aaKnown RBP16.44■□□□□ 0.22
CLK3-227ENST00000570296 BEX5Q5H9J7 111 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 TOR1AIP1Q5JTV8 583 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 MBOAT1Q6ZNC8 495 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 DNM1P46Q6ZS02 220 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 ANKRD53Q8N9V6 530 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 ZNF721Q8TF20 911 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 KCNJ9Q92806 393 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 ART5Q96L15 291 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 RUNDC3BQ96NL0 473 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 KCNK17Q96T54 332 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 AICDAQ9GZX7 198 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 SPNS1Q9H2V7 528 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 NHEJ1Q9H9Q4 299 aaPredicted RBP16.44■□□□□ 0.22
CLK3-227ENST00000570296 ELOVL5Q9NYP7 299 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 FETUBQ9UGM5 382 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 PDE10AQ9Y233 779 aa16.44■□□□□ 0.22
CLK3-227ENST00000570296 A0A1W2PNV4 684 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 CTAGE15A4D2H0 777 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 GOLGA8KD6RF30 607 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 C16orf97H3BN30 126 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 GOLGA8TH3BQL2 631 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 OVOL3O00110 214 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 LRATO95237 230 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 CHMP24386 653 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 RPL22P35268 128 aaKnown RBP16.43■□□□□ 0.22
CLK3-227ENST00000570296 STXBP1P61764 594 aaKnown RBP16.43■□□□□ 0.22
CLK3-227ENST00000570296 CRADDP78560 199 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 REEP5Q00765 189 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 STX4Q12846 297 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 EFTUD2Q15029 972 aaKnown RBP eCLIP16.43■□□□□ 0.223e-6■■■■■ 41.9
CLK3-227ENST00000570296 EIPR1Q53HC9 387 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 CLEC17AQ6ZS10 378 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 ZNF550Q7Z398 422 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 CTAGE6Q86UF2 777 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 SLC35B2Q8TB61 432 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 GAL3ST3Q96A11 431 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 ZC3HAV1LQ96H79 300 aaKnown RBP16.43■□□□□ 0.22
CLK3-227ENST00000570296 SLC39A3Q9BRY0 314 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 IL22Q9GZX6 179 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 SHARPINQ9H0F6 387 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 SLCO5A1Q9H2Y9 848 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 PARVBQ9HBI1 364 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 INTS10Q9NVR2 710 aaKnown RBP16.43■□□□□ 0.22
CLK3-227ENST00000570296 AMFRQ9UKV5 643 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 LAMP3Q9UQV4 416 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 MED16Q9Y2X0 877 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 DHRS7Q9Y394 339 aa16.43■□□□□ 0.22
CLK3-227ENST00000570296 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.42■□□□□ 0.22
CLK3-227ENST00000570296 H0Y3Z8 333 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 CYR61O00622 381 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 B3GALT2O43825 422 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 SMNDC1O75940 238 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLK3-227ENST00000570296 SNX4O95219 450 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 CRHP06850 196 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 C8GP07360 202 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 POU2F1P14859 743 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 PAMP19021 973 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 GCKP35557 465 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 ACVR1BP36896 505 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 NAGLUP54802 743 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 RWDD2BP57060 319 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 SESN2P58004 480 aaPredicted RBP16.42■□□□□ 0.22
CLK3-227ENST00000570296 CTBP1Q13363 440 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 SERTAD2Q14140 314 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 RCN2Q14257 317 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 CSHL1Q14406 222 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 NTRK2Q16620 822 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 LRRC8EQ6NSJ5 796 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 AADACL2Q6P093 401 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 CENPUQ71F23 418 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.42■□□□□ 0.22
CLK3-227ENST00000570296 CILP2Q8IUL8 1156 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 C9orf40Q8IXQ3 194 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 DIO2Q92813 273 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 OR4K3Q96R72 315 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 CHP1Q99653 195 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 CLCF1Q9UBD9 225 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 ADAMTS6Q9UKP5 1117 aa16.42■□□□□ 0.22
CLK3-227ENST00000570296 A0A088AWK7 358 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 ETHE1O95571 254 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 PGRP06401 933 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 APRTP07741 180 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 ZNF10P21506 573 aaPredicted RBP16.41■□□□□ 0.22
CLK3-227ENST00000570296 SAT1P21673 171 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 SP140Q13342 867 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 TOMM20Q15388 145 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 UBAP2Q5T6F2 1119 aaKnown RBP16.41■□□□□ 0.22
CLK3-227ENST00000570296 FNDC7Q5VTL7 733 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 LIPNQ5VXI9 398 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 DUPD1Q68J44 220 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 ZNF474Q6S9Z5 364 aaPredicted RBP16.41■□□□□ 0.22
CLK3-227ENST00000570296 PACS2Q86VP3 889 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms