RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GPSM3Q9Y4H4 160 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 PTPRDP23468 1912 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 FRS3O43559 492 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 MPZL2O60487 215 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 NCR1O76036 304 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 SRP54P61011 504 aaKnown RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 OR5D16Q8NGK9 328 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 NELL2Q99435 816 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 CCDC32Q9BV29 185 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 ABCG4Q9H172 646 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 GSTK1Q9Y2Q3 226 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 RHCEP18577 417 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 RAB8AP61006 207 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 GPAT3Q53EU6 434 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 KRT74Q7RTS7 529 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 CBARPQ8N350 705 aaPredicted RBP13.8□□□□□ -0.2
VPS35-210ENST00000568784 ZNF480Q8WV37 535 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 F2RL3Q96RI0 385 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 NRTNQ99748 197 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 COQ7Q99807 217 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 OSGEPL1Q9H4B0 414 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 ANKRA2Q9H9E1 313 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 HHATLQ9HCP6 504 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 ZDHHC4Q9NPG8 344 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 RNF186Q9NXI6 227 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 SH2B3Q9UQQ2 575 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 OR51B4Q9Y5P0 310 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 CACNA1CQ13936 2221 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 PRAMEF25A6NGN4 478 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 ANHXE9PGG2 379 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 HOXA2O43364 376 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 ADRA2AP08913 450 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 PTX3P26022 381 aaPredicted RBP13.8□□□□□ -0.2
VPS35-210ENST00000568784 MAN2A2P49641 1150 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 RAE1P78406 368 aaKnown RBP13.8□□□□□ -0.2
VPS35-210ENST00000568784 DBPQ10586 325 aaPredicted RBP13.8□□□□□ -0.2
VPS35-210ENST00000568784 TSEN54Q7Z6J9 526 aaKnown RBP13.8□□□□□ -0.2
VPS35-210ENST00000568784 CCDC190Q86UF4 302 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 TIGD4Q8IY51 512 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 WDR20Q8TBZ3 569 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 TRMT61AQ96FX7 289 aaKnown RBP13.8□□□□□ -0.2
VPS35-210ENST00000568784 KCTD7Q96MP8 289 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 KLHL1Q9NR64 748 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 PLCXD1Q9NUJ7 323 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 GPATCH2Q9NW75 528 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 TMPRSS11EQ9UL52 423 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 CHD5Q8TDI0 1954 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 SLC30A4O14863 429 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 MPC1LP0DKB6 136 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 OR12D1P0DN82 309 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 SLC8B1Q6J4K2 584 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 HORMAD2Q8N7B1 307 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 RASGEF1AQ8N9B8 481 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 ASB15Q8WXK1 588 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 STUB1Q9UNE7 303 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 INSL5Q9Y5Q6 135 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 PIPSLA2A3N6 862 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 ARHGEF15O94989 841 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 CELP19835 753 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 SP140Q13342 867 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 WSCD2Q2TBF2 565 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 LCN1P1Q5VSP4 162 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 ZNF783Q6ZMS7 281 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.8□□□□□ -0.2
VPS35-210ENST00000568784 NLRP8Q86W28 1048 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 BARHL1Q9BZE3 327 aa13.8□□□□□ -0.2
VPS35-210ENST00000568784 SPATA6Q9NWH7 488 aaPredicted RBP13.8□□□□□ -0.2
VPS35-210ENST00000568784 FEZF1A0PJY2 475 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 RNASET2O00584 256 aaKnown RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 CCL16O15467 120 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 SDHBP21912 280 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 GPR1P46091 355 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 RNF144AP50876 292 aaPredicted RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 LARS2Q15031 903 aaKnown RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 ZNF438Q7Z4V0 828 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 ALG14Q96F25 216 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 IGSF21Q96ID5 467 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 SPNS1Q9H2V7 528 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 H2AFY2Q9P0M6 372 aaPredicted RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 ZNF624Q9P2J8 865 aaPredicted RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 C2orf92A0A1B0GVN3 265 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 GPR37L1O60883 481 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 PPP2R1BP30154 601 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 RPS7P62081 194 aaKnown RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 LSM11P83369 360 aaKnown RBP eCLIP13.79□□□□□ -0.2
VPS35-210ENST00000568784 IRF5Q13568 498 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 METTL2BQ6P1Q9 378 aaKnown RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 ABI3BPQ7Z7G0 1075 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 NOXA1Q86UR1 476 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 BBS4Q96RK4 519 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 CXorf36Q9H7Y0 433 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 CAPN10Q9HC96 672 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 UCKL1Q9NWZ5 548 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 A0A1W2PQ45 241 aaPredicted RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 A0A1W2PQY0 241 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 WASHC1A8K0Z3 465 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 ISM1B1AKI9 464 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 GFYI3L273 518 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 C8orf89P0DMQ9 161 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 OSMP13725 252 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms