RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 COL22A1Q8NFW1 1626 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 AKAP11Q9UKA4 1901 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MYH14Q7Z406 1995 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 C4AP0C0L4 1744 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 C4BP0C0L5 1744 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 COL3A1P02461 1466 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 RGPD8O14715 1765 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 RGPD5Q99666 1765 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DLC1Q96QB1 1528 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FRMPD1Q5SYB0 1578 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SAMD9LQ8IVG5 1584 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 A0A087WWL8 130 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 hCG_1807616A0A1W2PRN6 198 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 A1L4Q6 167 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 GSAPA4D1B5 854 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 B4E171 279 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 KRBOX1C9JBD0 128 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 G3V2T6 193 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 H0YIZ8 118 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 M0QYV0 167 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 GRM8O00222 908 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SULT1C2O00338 296 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FOXE1O00358 373 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 PGRMC2O15173 223 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ADAMDEC1O15204 470 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 STX7O15400 261 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 CD3EAPO15446 510 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 GPAA1O43292 621 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 HSPA12AO43301 675 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PSTPIP1O43586 416 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DPM1O60762 260 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 STX11O75558 287 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 RPP40O75818 363 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 IL18RAPO95256 599 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CELF2O95319 508 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 AHSA1O95433 338 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 C22orf31O95567 290 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 GGPS1O95749 300 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 TOP3BO95985 862 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 PAK4O96013 591 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 F9P00740 461 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 C1QBP02746 253 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 IGFBP1P08833 259 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 IL6RP08887 468 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 SLC2A1P11166 492 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 AKR1A1P14550 325 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ZNF182P17025 639 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 WT1P19544 449 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 HNF1AP20823 631 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 MATN1P21941 496 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CPN2P22792 545 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FPR3P25089 353 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ACVR2AP27037 513 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PSMA5P28066 241 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ADSSP30520 456 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 OR1E1P30953 314 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FMO4P31512 558 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SPRP35270 261 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 RORAP35398 523 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CEACAM6P40199 344 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 IL15P40933 162 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 ACAA2P42765 397 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 SERPINB10P48595 397 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CSNK1DP48730 415 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PITPNBP48739 271 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ACOT2P49753 483 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 RBP2P50120 134 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PPP5CP53041 499 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 HSPA2P54652 639 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ADPRHP54922 357 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CDH13P55290 713 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SOX10P56693 466 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 EEFSECP57772 596 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 OR2B6P58173 313 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 STARD6P59095 220 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DEFA1P59665 94 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DEFA3P59666 94 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 HERVK_113P63132 956 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CDKL1Q00532 357 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SRSF4Q08170 494 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 TROAPQ12815 778 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CHIT1Q13231 466 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 NME3Q13232 169 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ILKQ13418 452 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 HNF4GQ14541 408 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 GANABQ14697 944 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 ANGPT1Q15389 498 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 GPR68Q15743 365 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 MAPK11Q15759 364 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PPP1R3AQ16821 1122 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PNLIPRP3Q17RR3 467 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SLC5A12Q1EHB4 618 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 BTBD16Q32M84 506 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ZNF528Q3MIS6 628 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PARP15Q460N3 678 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SLC36A3Q495N2 470 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 GPAT3Q53EU6 434 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PLA1AQ53H76 456 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ZNF484Q5JVG2 852 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 C10orf120Q5SQS8 335 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms