RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 KIFC1Q9BW19 673 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 IL22Q9GZX6 179 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 FBXO6Q9NRD1 293 aaPredicted RBP10.73□□□□□ -0.69
CLK3-222ENST00000568232 ZNF226Q9NYT6 803 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 KLHL42Q9P2K6 505 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 AMFRQ9UKV5 643 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 CNOT11Q9UKZ1 510 aaKnown RBP10.73□□□□□ -0.69
CLK3-222ENST00000568232 A8MV72 311 aaPredicted RBP10.72□□□□□ -0.69
CLK3-222ENST00000568232 CYR61O00622 381 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 KCNAB3O43448 404 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 LDB3O75112 727 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 MFAP3LO75121 409 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 RCBTB2O95199 551 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 HPNP05981 417 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 SERPINA6P08185 405 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 HNRNPH1P31943 449 aaKnown RBP10.72□□□□□ -0.69
CLK3-222ENST00000568232 STIP1P31948 543 aaKnown RBP10.72□□□□□ -0.69
CLK3-222ENST00000568232 CDK9P50750 372 aaKnown RBP10.72□□□□□ -0.69
CLK3-222ENST00000568232 NAGLUP54802 743 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 ID2Q02363 134 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 RCAN2Q14206 197 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 NHSL2Q5HYW2 709 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 NEPROQ6NW34 567 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 KIAA1328Q86T90 577 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 DENND6AQ8IWF6 608 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 C9orf40Q8IXQ3 194 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 TRPV3Q8NET8 790 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 OR56A3Q8NH54 315 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 GABPB2Q8TAK5 448 aaPredicted RBP10.72□□□□□ -0.69
CLK3-222ENST00000568232 KCNJ9Q92806 393 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 ABTB1Q969K4 478 aaPredicted RBP10.72□□□□□ -0.69
CLK3-222ENST00000568232 NTNG2Q96CW9 530 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 FAR2Q96K12 515 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 ZNF597Q96LX8 424 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 UBQLN3Q9H347 655 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 PARVBQ9HBI1 364 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 EIF2B3Q9NR50 452 aaKnown RBP10.72□□□□□ -0.69
CLK3-222ENST00000568232 CNIH4Q9P003 139 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 PCDHA13Q9Y5I0 950 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 RAI1Q7Z5J4 1906 aaPredicted RBP10.72□□□□□ -0.69
CLK3-222ENST00000568232 DSCAMO60469 2012 aa10.72□□□□□ -0.69
CLK3-222ENST00000568232 CTAGE9A4FU28 777 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 HRKO00198 91 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 ERI3O43414 337 aaKnown RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 CTNSO60931 367 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 CYP4B1P13584 511 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 NPY2RP49146 381 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 REEP5Q00765 189 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 DHX9Q08211 1270 aaKnown RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 STX4Q12846 297 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 TOMM20Q15388 145 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 OASLQ15646 514 aaKnown RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 KCTD19Q17RG1 926 aaPredicted RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 BBS9Q3SYG4 887 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 FNDC7Q5VTL7 733 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 ZNF470Q6ECI4 717 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 SLC22A8Q8TCC7 542 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 ZPLD1Q8TCW7 415 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 DOK4Q8TEW6 326 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 SLC5A11Q8WWX8 675 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 ZBED6CLQ96FA7 236 aaPredicted RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 FAM111AQ96PZ2 611 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 NPLQ9BXD5 320 aaPredicted RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 PIGMQ9H3S5 423 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 CXorf56Q9H5V9 222 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 INTS10Q9NVR2 710 aaKnown RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 BFARQ9NZS9 450 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 COPS7AQ9UBW8 275 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 PACSIN3Q9UKS6 424 aa10.71□□□□□ -0.69
CLK3-222ENST00000568232 PACSIN2Q9UNF0 486 aaPredicted RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 MRPS33Q9Y291 106 aaKnown RBP10.71□□□□□ -0.69
CLK3-222ENST00000568232 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 B3GALT2O43825 422 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 GPRIN2O60269 458 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 TNFSF13O75888 250 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 SMNDC1O75940 238 aaKnown RBP eCLIP10.7□□□□□ -0.7
CLK3-222ENST00000568232 PLAUP00749 431 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 C8GP07360 202 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 FBXO45P0C2W1 286 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 CCKARP32238 428 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 PLA2G16P53816 162 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 DIO3P55073 304 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 NAP1L1P55209 391 aaKnown RBP10.7□□□□□ -0.7
CLK3-222ENST00000568232 LIM2P55344 173 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 TIAL1Q01085 375 aaKnown RBP eCLIP10.7□□□□□ -0.7
CLK3-222ENST00000568232 SRYQ05066 204 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 TBL3Q12788 808 aaKnown RBP10.7□□□□□ -0.7
CLK3-222ENST00000568232 DUPD1Q68J44 220 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 UGT3A1Q6NUS8 523 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 TMEM64Q6YI46 380 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 DGAT2L6Q6ZPD8 337 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 YRDCQ86U90 279 aaKnown RBP10.7□□□□□ -0.7
CLK3-222ENST00000568232 KLHDC8AQ8IYD2 350 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 NUBPLQ8TB37 319 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 DIO2Q92813 273 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 GAL3ST3Q96A11 431 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 MS4A6EQ96DS6 147 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 SENP5Q96HI0 755 aaPredicted RBP10.7□□□□□ -0.7
CLK3-222ENST00000568232 QRFPRQ96P65 431 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 TM9SF2Q99805 663 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms