RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 TMEM156Q8N614 296 aa12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 HORMAD2Q8N7B1 307 aa12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 ZNF321PQ8N8H1 164 aa12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 FAM98AQ8NCA5 519 aaKnown RBP12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 TMEM125Q96AQ2 219 aa12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 REPS1Q96D71 796 aa12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 ZIM3Q96PE6 472 aa12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 ZBTB26Q9HCK0 441 aa12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 ADGRE2Q9UHX3 823 aa12.7□□□□□ -0.38
VPS9D1-204ENST00000565023 POLEQ07864 2286 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 GLOD5A6NK44 160 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 C17orf105B2RV13 164 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 NPIPA5E9PKD4 350 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 G3V2L1 256 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 WWP2O00308 870 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 ZNHIT1O43257 154 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 CTIFO43310 598 aaKnown RBP12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 FGF17O60258 216 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 EEDO75530 441 aaKnown RBP12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 ITGA10O75578 1167 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 ZFAND5O76080 213 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 DDAH2O95865 285 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 RFC3P40938 356 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 PIK3CBP42338 1070 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 PRKAA2P54646 552 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 CDH13P55290 713 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 HERVK_113P63132 956 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 KRT71Q3SY84 523 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 CYP20A1Q6UW02 462 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 SLC22A9Q8IVM8 553 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 LGI4Q8N135 537 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 CPSF7Q8N684 471 aaKnown RBP12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 BANPQ8N9N5 519 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 L3MBTL4Q8NA19 623 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 DNAJB8Q8NHS0 232 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 ZNF483Q8TF39 744 aaPredicted RBP12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 PPWD1Q96BP3 646 aaKnown RBP12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 SCMH1Q96GD3 660 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 APOPT1Q96IL0 206 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 DGAT2Q96PD7 388 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 NTMT1Q9BV86 223 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 ERVK-6Q9BXR3 956 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 NPIPA1Q9UND3 350 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 ERVK-11Q9UQG0 969 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 TSC22D4Q9Y3Q8 395 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 ATG4BQ9Y4P1 393 aa12.69□□□□□ -0.38
VPS9D1-204ENST00000565023 WASHC1A8K0Z3 465 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 H0YIV9 168 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 ZG16O60844 167 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 IMPDH1P20839 514 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 PTX3P26022 381 aaPredicted RBP12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 HLCSP50747 726 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 SSR4P51571 173 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 GPR85P60893 370 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 TNFRSF17Q02223 184 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 TRAF3Q13114 568 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 SERTAD2Q14140 314 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 TERF2Q15554 542 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 UNC50Q53HI1 259 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 ZNF678Q5SXM1 525 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 LRIG3Q6UXM1 1119 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 ZYG11AQ6WRX3 759 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 MILR1Q7Z6M3 343 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 CROCCP2Q86T23 111 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 GPR180Q86V85 440 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 SRRM1Q8IYB3 904 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 CYP4Z2PQ8N1L4 340 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 OR4F6Q8NGB9 312 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 OR14A16Q8NHC5 309 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 WDR20Q8TBZ3 569 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 RDH11Q8TC12 318 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 SLC2A12Q8TD20 617 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 PTPMT1Q8WUK0 201 aaPredicted RBP12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 DAZLQ92904 295 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 UCN3Q969E3 161 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 ANKRD9Q96BM1 317 aaPredicted RBP12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 CCDC126Q96EE4 140 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 L3HYPDHQ96EM0 354 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 FRMD6Q96NE9 622 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 TMEM237Q96Q45 408 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 RPF2Q9H7B2 306 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 SENP1Q9P0U3 644 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 VTI1BQ9UEU0 232 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 PHF11Q9UIL8 331 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 PLLPQ9Y342 182 aa12.68□□□□□ -0.38
VPS9D1-204ENST00000565023 GTF3C1Q12789 2109 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 A0A1B0GTL3 188 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 A8MVJ9 347 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 PPP6CO00743 305 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 RGS16O15492 202 aaPredicted RBP12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 TMPRSS11DO60235 418 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 NME2P1O60361 137 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 OR2J2O76002 312 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 SCELO95171 688 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 CLDN1O95832 211 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 MYL2P10916 166 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 NME2P22392 152 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 BSGP35613 385 aa12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 BUD31P41223 144 aaPredicted RBP12.67□□□□□ -0.38
VPS9D1-204ENST00000565023 MEOX1P50221 254 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms