RNA–Protein interactions for RNA: ENST00000564540.5

UBR1-205, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-205ENST00000564540 KLF2Q9Y5W3 355 aaPredicted RBP3.43□□□□□ -1.86
UBR1-205ENST00000564540 COL16A1Q07092 1604 aaPredicted RBP3.43□□□□□ -1.86
UBR1-205ENST00000564540 MAGEB16A2A368 324 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 SAP18O00422 153 aaKnown RBP3.42□□□□□ -1.86
UBR1-205ENST00000564540 IFIT3O14879 490 aaKnown RBP3.42□□□□□ -1.86
UBR1-205ENST00000564540 SYT7O43581 403 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 HSPA4LO95757 839 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 SCN1BQ07699 218 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 RFTN1Q14699 578 aaPredicted RBP3.42□□□□□ -1.86
UBR1-205ENST00000564540 AGAP6Q5VW22 663 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 PET117Q6UWS5 81 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 WDR49Q8IV35 697 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 CCDC197Q8NCU1 140 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 OR1K1Q8NGR3 316 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 UBLCP1Q8WVY7 318 aaPredicted RBP3.42□□□□□ -1.86
UBR1-205ENST00000564540 MR1Q95460 341 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 MRPL24Q96A35 216 aaKnown RBP3.42□□□□□ -1.86
UBR1-205ENST00000564540 ZBED6CLQ96FA7 236 aaPredicted RBP3.42□□□□□ -1.86
UBR1-205ENST00000564540 DEFB126Q9BYW3 111 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 SRD5A3Q9H8P0 318 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 PLEK2Q9NYT0 353 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 PRO0461Q9UI25 63 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 RNF24Q9Y225 148 aa3.42□□□□□ -1.86
UBR1-205ENST00000564540 A0A087X0K7 114 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 KLF18A0A0U1RQI7 1052 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 ATP6AP2A0A1C7CYW4 349 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 CCSO14618 274 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 WDR46O15213 610 aaKnown RBP3.41□□□□□ -1.86
UBR1-205ENST00000564540 CSDE1O75534 798 aaKnown RBP3.41□□□□□ -1.86
UBR1-205ENST00000564540 KRTAP5-8O75690 187 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 CASTP20810 708 aaKnown RBP3.41□□□□□ -1.86
UBR1-205ENST00000564540 GLRA1P23415 457 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 GSTO1P78417 241 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 PTK6Q13882 451 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 DCAF12Q5T6F0 453 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 WDR25Q64LD2 544 aaPredicted RBP3.41□□□□□ -1.86
UBR1-205ENST00000564540 SNRNP48Q6IEG0 339 aaKnown RBP3.41□□□□□ -1.86
UBR1-205ENST00000564540 Q6ZVH6 145 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 ZNF444Q8N0Y2 327 aaPredicted RBP3.41□□□□□ -1.86
UBR1-205ENST00000564540 BEST4Q8NFU0 473 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 SPATA18Q8TC71 538 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 SNRNP27Q8WVK2 155 aaKnown RBP3.41□□□□□ -1.86
UBR1-205ENST00000564540 TCP11Q8WWU5 503 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 FAM162AQ96A26 154 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 ESAMQ96AP7 390 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 RAB40CQ96S21 281 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 LRRC2Q9BYS8 371 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 CXXC4Q9H2H0 198 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 IL17CQ9P0M4 197 aa3.41□□□□□ -1.86
UBR1-205ENST00000564540 CHUKO15111 745 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 KIAA0513O60268 411 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 FCGR3AP08637 254 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 ZBTB25P24278 435 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 MAGEB1P43366 347 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 CCR4P51679 360 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 MFGE8Q08431 387 aaPredicted RBP3.4□□□□□ -1.87
UBR1-205ENST00000564540 SPHARQ15513 63 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 ACKR1Q16570 336 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 CYP4V2Q6ZWL3 525 aaPredicted RBP3.4□□□□□ -1.87
UBR1-205ENST00000564540 CHDHQ8NE62 594 aaPredicted RBP3.4□□□□□ -1.87
UBR1-205ENST00000564540 ZNF671Q8TAW3 534 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 TBCKQ8TEA7 893 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 DEPDC1BQ8WUY9 529 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 RBM18Q96H35 190 aaKnown RBP3.4□□□□□ -1.87
UBR1-205ENST00000564540 LINC00167Q96N53 147 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 THUMPD3Q9BV44 507 aaKnown RBP3.4□□□□□ -1.87
UBR1-205ENST00000564540 IL1RL2Q9HB29 575 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 ZNF275Q9NSD4 429 aaPredicted RBP3.4□□□□□ -1.87
UBR1-205ENST00000564540 PSORS1C1Q9UIG5 152 aa3.4□□□□□ -1.87
UBR1-205ENST00000564540 RTL8CO15255 209 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 TIMM44O43615 452 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 ATP9AO75110 1047 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 ANXA9O76027 345 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 GPX3P22352 226 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 MTIF2P46199 727 aaKnown RBP3.39□□□□□ -1.87
UBR1-205ENST00000564540 EMC2Q15006 297 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 CNPY1Q3B7I2 92 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 ANKRD55Q3KP44 614 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 TTC31Q49AM3 519 aaPredicted RBP3.39□□□□□ -1.87
UBR1-205ENST00000564540 C14orf28Q4W4Y0 310 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 ABRAXAS1Q6UWZ7 409 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 NHLRC1Q6VVB1 395 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 GVQW1Q8N7I0 195 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 OR4F5Q8NH21 305 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 AFAP1L1Q8TED9 768 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 GANCQ8TET4 914 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 PRCCQ92733 491 aaPredicted RBP3.39□□□□□ -1.87
UBR1-205ENST00000564540 PNPLA2Q96AD5 504 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 NUS1Q96E22 293 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 PHYHIPLQ96FC7 376 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 C16orf58Q96GQ5 468 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 SIGLEC12Q96PQ1 595 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 ACPTQ9BZG2 426 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 DPEP3Q9H4B8 488 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 PDFQ9HBH1 243 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 TUFT1Q9NNX1 390 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 AMBNQ9NP70 447 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 ABCC13Q9NSE7 274 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 TAS2R16Q9NYV7 291 aa3.39□□□□□ -1.87
UBR1-205ENST00000564540 SEPT10Q9P0V9 454 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms