RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CDYL2Q8N8U2 506 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 GBP7Q8N8V2 638 aaPredicted RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 APCDD1LQ8NCL9 501 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 NCLNQ969V3 563 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 RBM18Q96H35 190 aaKnown RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 ART5Q96L15 291 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 DGAT2Q96PD7 388 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 BARD1Q99728 777 aaKnown RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 ZNF717Q9BY31 904 aaPredicted RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 PARD6BQ9BYG5 372 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 MKS1Q9NXB0 559 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 COPS7AQ9UBW8 275 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLK3-216ENST00000564468 EMCNQ9ULC0 261 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 ATG4BQ9Y4P1 393 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 ASB4Q9Y574 426 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 V9GYY5 206 aaPredicted RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 HIVEP3Q5T1R4 2406 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 TRBV11-1A0A0K0K1C0 115 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 C17orf105B2RV13 164 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 G3V2L1 256 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 TGFBR3LH3BV60 316 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 PPP6CO00743 305 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 TMPRSS11DO60235 418 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 RASAL1O95294 804 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 ESRRBO95718 433 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 F10P00742 488 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 CRYABP02511 175 aaKnown RBP12.49□□□□□ -0.41
CLK3-216ENST00000564468 STT3AP46977 705 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 MLF1P58340 268 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 IGLV3-21P80748 117 aaPredicted RBP12.49□□□□□ -0.41
CLK3-216ENST00000564468 PLIN5Q00G26 463 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 TUBA3CQ13748 450 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 ZNF766Q5HY98 468 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 CCNYL2Q5T2Q4 361 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 C18orf63Q68DL7 685 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 OR52E8Q6IFG1 317 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 TUBA3EQ6PEY2 450 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 TRABD2AQ86V40 505 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 C4orf33Q8N1A6 199 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 TMEM178AQ8NBL3 297 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 FAM98AQ8NCA5 519 aaKnown RBP12.49□□□□□ -0.41
CLK3-216ENST00000564468 OR8K3Q8NH51 312 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 OR2W6PQ8NHA6 318 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 DNAJB8Q8NHS0 232 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 FAR1Q8WVX9 515 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 ANKRD9Q96BM1 317 aaPredicted RBP12.49□□□□□ -0.41
CLK3-216ENST00000564468 C19orf60Q96EN9 201 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 C5orf34Q96MH7 638 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 MRPL1Q9BYD6 325 aaKnown RBP12.49□□□□□ -0.41
CLK3-216ENST00000564468 MID1IP1Q9NPA3 183 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 VPS29Q9UBQ0 182 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 LGALS13Q9UHV8 139 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 ZNF225Q9UK10 706 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 CENPEQ02224 2701 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 POLEQ07864 2286 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 GTF3C1Q12789 2109 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 EML6Q6ZMW3 1958 aa12.49□□□□□ -0.41
CLK3-216ENST00000564468 A0A1B0GTL3 188 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 FOXO6A8MYZ6 492 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 TCP11X1B4DZS4 312 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 MANBAO00462 879 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 FGF17O60258 216 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 GPR75O95800 540 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 KLK1P06870 262 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 ALOX15P16050 662 aaPredicted RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 GNLYP22749 145 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 TPP2P29144 1249 aaPredicted RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 CD96P40200 585 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 CYB561P49447 251 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 GPR143P51810 404 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 MAPK12P53778 367 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 NAGLUP54802 743 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 TRA2BP62995 288 aaKnown RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 FOLH1Q04609 750 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 OR1C1Q15619 314 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 LIPMQ5VYY2 423 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 HSDL2Q6YN16 418 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 COMMD6Q7Z4G1 85 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 ST13P4Q8IZP2 240 aaPredicted RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 TMEM156Q8N614 296 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 AMER2Q8N7J2 671 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 ST6GALNAC3Q8NDV1 305 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 OR5L2Q8NGL0 311 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 GRHL3Q8TE85 626 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 PTPMT1Q8WUK0 201 aaPredicted RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 SREK1Q8WXA9 508 aaKnown RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 TMEM125Q96AQ2 219 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 APOPT1Q96IL0 206 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 SMC6Q96SB8 1091 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 NPAS2Q99743 824 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 TMEM109Q9BVC6 243 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 OR8D2Q9GZM6 311 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 GSTO2Q9H4Y5 243 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 FARSBQ9NSD9 589 aaKnown RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 RYDENQ9NUL5 291 aaKnown RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 OLAHQ9NV23 265 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLK3-216ENST00000564468 OXSMQ9NWU1 459 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 SENP1Q9P0U3 644 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms