RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 REEP3Q6NUK4 255 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 FAHD1Q6P587 224 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 KCTD8Q6ZWB6 473 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 SZRD1Q7Z422 152 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 ATG16L2Q8NAA4 619 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 CNRIP1Q96F85 164 aaPredicted RBP18.1■□□□□ 0.49
SMPD3-203ENST00000563226 ZNF300Q96RE9 604 aaPredicted RBP18.1■□□□□ 0.49
SMPD3-203ENST00000563226 KLHL25Q9H0H3 589 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 A4GALTQ9NPC4 353 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 EHD3Q9NZN3 535 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 KIF17Q9P2E2 1029 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 AASSQ9UDR5 926 aa18.1■□□□□ 0.49
SMPD3-203ENST00000563226 PRAMEF26H0Y7S4 382 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 UGT2B7P16662 529 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 PMS2P3Q13401 168 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 SMAD4Q13485 552 aaKnown RBP18.09■□□□□ 0.49
SMPD3-203ENST00000563226 DUSP7Q16829 419 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 FBXO42Q6P3S6 717 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 GALNT15Q8N3T1 639 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 OR52J3Q8NH60 311 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 SUN3Q8TAQ9 357 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 LZICQ8WZA0 190 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 HDAC2Q92769 488 aaKnown RBP18.09■□□□□ 0.49
SMPD3-203ENST00000563226 OTUB1Q96FW1 271 aaPredicted RBP18.09■□□□□ 0.49
SMPD3-203ENST00000563226 TWSG1Q9GZX9 223 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 POLR1BQ9H9Y6 1135 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 POLMQ9NP87 494 aaPredicted RBP18.09■□□□□ 0.49
SMPD3-203ENST00000563226 KRT84Q9NSB2 600 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 SH3GLB1Q9Y371 365 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 PCDHGB3Q9Y5G1 929 aa18.09■□□□□ 0.49
SMPD3-203ENST00000563226 PRAMEF27A3QJZ7 478 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 GSAPA4D1B5 854 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 OR6C74A6NCV1 312 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 TNFRSF11BO00300 401 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 SH3BP5O60239 455 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 CTSVO60911 334 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 JRKO75564 520 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 IGLV3-19P01714 112 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 TFPTP0C1Z6 253 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 C8orf89P0DMQ9 161 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 EEF1B2P24534 225 aaKnown RBP18.08■□□□□ 0.49
SMPD3-203ENST00000563226 SLC5A2P31639 672 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 GPC1P35052 558 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 RABIFP47224 123 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 ILF3Q12906 894 aaKnown RBP eCLIP18.08■□□□□ 0.49
SMPD3-203ENST00000563226 EIF2B5Q13144 721 aaKnown RBP18.08■□□□□ 0.49
SMPD3-203ENST00000563226 RBM48Q5RL73 367 aaKnown RBP18.08■□□□□ 0.49
SMPD3-203ENST00000563226 ZNF773Q6PK81 442 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 OR5D16Q8NGK9 328 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 OR4C15Q8NGM1 316 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 CNIH3Q8TBE1 160 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 MAGED4Q96JG8 741 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 MAPKAP1Q9BPZ7 522 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 GPR174Q9BXC1 333 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 THSD1Q9NS62 852 aa18.08■□□□□ 0.49
SMPD3-203ENST00000563226 OR2A25A4D2G3 310 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 P2RX6O15547 441 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 TNFP01375 233 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 ZNF888P0CJ79 500 aaPredicted RBP18.08■□□□□ 0.48
SMPD3-203ENST00000563226 CHRNB1P11230 501 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 PCSK6P29122 969 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 CDH12P55289 794 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 RPS15AP62244 130 aaKnown RBP18.08■□□□□ 0.48
SMPD3-203ENST00000563226 BTN3A2P78410 334 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 SPIBQ01892 262 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 KIR2DS3Q14952 304 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 GPR19Q15760 415 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 NEDD8Q15843 81 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 FCRL6Q6DN72 434 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 GPR141Q7Z602 305 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 TRIM48Q8IWZ4 208 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 FAM160A2Q8N612 972 aaPredicted RBP18.08■□□□□ 0.48
SMPD3-203ENST00000563226 GPBAR1Q8TDU6 330 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 GEMIN6Q8WXD5 167 aaKnown RBP18.08■□□□□ 0.48
SMPD3-203ENST00000563226 BBS4Q96RK4 519 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 PHF7Q9BWX1 381 aaPredicted RBP18.08■□□□□ 0.48
SMPD3-203ENST00000563226 ACTR10Q9NZ32 417 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 PTTG2Q9NZH5 202 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 CES1P1Q9UKY3 287 aa18.08■□□□□ 0.48
SMPD3-203ENST00000563226 C5orf58C9J3I9 102 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 IFNA14P01570 189 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 HTR1AP08908 422 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 OR12D1P0DN82 309 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 NTSP30990 170 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 RYKP34925 604 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 FEN1P39748 380 aaKnown RBP18.07■□□□□ 0.48
SMPD3-203ENST00000563226 STXBP1P61764 594 aaKnown RBP18.07■□□□□ 0.48
SMPD3-203ENST00000563226 IL5RAQ01344 420 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 PIGFQ07326 219 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 CCDC85BQ15834 202 aaPredicted RBP18.07■□□□□ 0.48
SMPD3-203ENST00000563226 LAIR1Q6GTX8 287 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 B3GNT6Q6ZMB0 384 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 OLIG3Q7RTU3 272 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 ASPGQ86U10 573 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 ARMC8Q8IUR7 673 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 SLC30A8Q8IWU4 369 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 CCDC116Q8IYX3 515 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 TTC29Q8NA56 475 aaPredicted RBP18.07■□□□□ 0.48
SMPD3-203ENST00000563226 GPR32P1Q8NGA4 272 aa18.07■□□□□ 0.48
SMPD3-203ENST00000563226 FBLIM1Q8WUP2 373 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms