RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ILKAPQ9H0C8 392 aaPredicted RBP12.17□□□□□ -0.46
NEDD8-208ENST00000560427 TUBB1Q9H4B7 451 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 ZNF552Q9H707 407 aaPredicted RBP12.17□□□□□ -0.46
NEDD8-208ENST00000560427 LRTM1Q9HBL6 345 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 C1orf109Q9NX04 203 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 TEX10Q9NXF1 929 aaPredicted RBP12.17□□□□□ -0.46
NEDD8-208ENST00000560427 EHD3Q9NZN3 535 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 TEKT2Q9UIF3 430 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 TP53TG5Q9Y2B4 290 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 PCDHA9Q9Y5H5 950 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 IGHV3-20A0A0C4DH32 117 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 GNG14A0A1W2PPG7 69 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 A6NL46 340 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 TGFBR3LH3BV60 316 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 KLF11O14901 512 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 DPM1O60762 260 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 LDB3O75112 727 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 SASH3O75995 380 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 GPR75O95800 540 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 IFNA16P05015 189 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 SOX11P35716 441 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 TAS2R50P59544 299 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 FOLH1Q04609 750 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 NR6A1Q15406 480 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 SCIMPQ6UWF3 145 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 IGFL2Q6UWQ7 119 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 ISLR2Q6UXK2 745 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 ASB18Q6ZVZ8 466 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 IKBIPQ70UQ0 350 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 CLNKQ7Z7G1 428 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 DDIASQ8IXT1 998 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 SAMD14Q8IZD0 417 aaPredicted RBP12.16□□□□□ -0.46
NEDD8-208ENST00000560427 ST13P4Q8IZP2 240 aaPredicted RBP12.16□□□□□ -0.46
NEDD8-208ENST00000560427 MORN4Q8NDC4 146 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 DNAJB14Q8TBM8 379 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 MGARPQ8TDB4 240 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 ELP5Q8TE02 316 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 TM4SF18Q96CE8 201 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 RBM18Q96H35 190 aaKnown RBP12.16□□□□□ -0.46
NEDD8-208ENST00000560427 ART5Q96L15 291 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 FCRL1Q96LA6 429 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 PPP3R2Q96LZ3 170 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 DGAT2Q96PD7 388 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 LMF1Q96S06 567 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 EPS8L2Q9H6S3 715 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 THAP1Q9NVV9 213 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 ZDHHC2Q9UIJ5 367 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 PSME2Q9UL46 239 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 FIS1Q9Y3D6 152 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 CLCA3PQ9Y6N3 262 aa12.16□□□□□ -0.46
NEDD8-208ENST00000560427 TMEM233B4DJY2 109 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 PIP5K1BO14986 540 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 LSM1O15116 133 aaKnown RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 SEC22BO75396 215 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 LYPLA1O75608 230 aaPredicted RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 ANXA4P09525 319 aaPredicted RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 SLC35E2P0CK97 266 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 ALOX15P16050 662 aaPredicted RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 PIK3R1P27986 724 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 RPL14P50914 215 aaKnown RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 RAE1P78406 368 aaKnown RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 BST1Q10588 318 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 MFAP5Q13361 173 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 KIAA0040Q15053 153 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 SPRED3Q2MJR0 410 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 CES4AQ5XG92 561 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 FAM219BQ5XKK7 198 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 H3F3CQ6NXT2 135 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 SLC48A1Q6P1K1 146 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 ATG14Q6ZNE5 492 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 Q6ZSR9 355 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 LRRC34Q8IZ02 419 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 SLC5A8Q8N695 610 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 ZNF781Q8N8C0 355 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 NFAM1Q8NET5 270 aaPredicted RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 OR4K14Q8NGD5 310 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 AGR3Q8TD06 166 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 BRIX1Q8TDN6 353 aaKnown RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 PSMF1Q92530 271 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 VMP1Q96GC9 406 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 SORT1Q99523 831 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 RNF32Q9H0A6 362 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 MANSC1Q9H8J5 431 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 MYNNQ9NPC7 610 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 PNO1Q9NRX1 252 aaKnown RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 RYDENQ9NUL5 291 aaKnown RBP12.15□□□□□ -0.46
NEDD8-208ENST00000560427 ABI3Q9P2A4 366 aa12.15□□□□□ -0.46
NEDD8-208ENST00000560427 GLOD5A6NK44 160 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 C17orf105B2RV13 164 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 SLCO1B7G3V0H7 640 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 MASP2O00187 686 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 ATP8B1O43520 1251 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 ITM2AO43736 263 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 OR10H2O60403 315 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 SNNO75324 88 aaPredicted RBP12.14□□□□□ -0.47
NEDD8-208ENST00000560427 PRKRAO75569 313 aaKnown RBP12.14□□□□□ -0.47
NEDD8-208ENST00000560427 PDGFAP04085 211 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 IL3P08700 152 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 LINC00032P0C843 101 aa12.14□□□□□ -0.47
NEDD8-208ENST00000560427 ITGAMP11215 1152 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms