RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	OR1F1	O43749	312 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	TIMM8A	O60220	97 aa	Predicted RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	HCN1	O60741	890 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	NXPH3	O95157	252 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	NDUFA10	O95299	355 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	LCA5L	O95447	670 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	GOT2	P00505	430 aa	Known RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	IGHV2-70	P01814	119 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	SP9	P0CG40	484 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	ITGAM	P11215	1152 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	CETP	P11597	493 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	CPN1	P15169	458 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	CAPN2	P17655	700 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	NT5E	P21589	574 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	ZFP36	P26651	326 aa	Known RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	PCSK6	P29122	969 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	MAGEA9	P43362	315 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	P2RX3	P56373	397 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	STX17	P56962	302 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	PPID	Q08752	370 aa	Known RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	CAMK4	Q16566	473 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	SYTL3	Q4VX76	610 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	PAGE2B	Q5JRK9	111 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	PRAMEF19	Q5SWL8	479 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	UGT3A1	Q6NUS8	523 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	PLXDC2	Q6UX71	529 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	TMPRSS11F	Q6ZWK6	438 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	RD3	Q7Z3Z2	195 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	SLC22A16	Q86VW1	577 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	LRRC34	Q8IZ02	419 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	CEP112	Q8N8E3	955 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	M1AP	Q8TC57	530 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	SAP25	Q8TEE9	199 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	SCFD1	Q8WVM8	642 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	SPRYD4	Q8WW59	207 aa	Predicted RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	SLC44A1	Q8WWI5	657 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	PROX1	Q92786	737 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	FOXN4	Q96NZ1	517 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	BBC3	Q96PG8	261 aa	Predicted RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	TESK2	Q96S53	571 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	GFI1	Q99684	422 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	WRAP53	Q9BUR4	548 aa	Known RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	SLC2A11	Q9BYW1	496 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	TM6SF1	Q9BZW5	370 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	HINT3	Q9NQE9	182 aa	Known RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	ACSS1	Q9NUB1	689 aa	Predicted RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	OSER1	Q9NX31	292 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	MIS18A	Q9NYP9	233 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	P2RX2	Q9UBL9	471 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	CYTH4	Q9UIA0	394 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	ADAM21	Q9UKJ8	722 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	RUVBL2	Q9Y230	463 aa	Known RBP	3.9	□□□□□ -1.79
USP44-208	ENST00000552440	LRP12	Q9Y561	859 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	TOPBP1	Q92547	1522 aa		3.9	□□□□□ -1.79
USP44-208	ENST00000552440	KIF13A	Q9H1H9	1805 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	CARMIL1	Q5VZK9	1371 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	CFAP65	Q6ZU64	1925 aa	Known RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	LOC105371242	A0A075B767	164 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	EIF3H	O15372	352 aa	Known RBP eCLIP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	PEX1	O43933	1283 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	GLRA3	O75311	464 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	NDUFS6	O75380	124 aa	Known RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	STX11	O75558	287 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	FCGR1A	P12314	374 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	CCNB1	P14635	433 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	TCN1	P20061	433 aa	Predicted RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	MAT2A	P31153	395 aa	Known RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	TPMT	P51580	245 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	THOP1	P52888	689 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	CDH6	P55285	790 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	HERV-K104	P63124	156 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	FKBP1B	P68106	108 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	FOXM1	Q08050	763 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	TRAF1	Q13077	416 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	HNRNPA0	Q13151	305 aa	Known RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	NPTX1	Q15818	432 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	EXT1	Q16394	746 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	TXNRD1	Q16881	649 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	DCAF4L1	Q3SXM0	396 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	MOGAT2	Q3SYC2	334 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	LIPK	Q5VXJ0	399 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	TMPRSS11B	Q86T26	416 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	NELFCD	Q8IXH7	590 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	PAQR4	Q8N4S7	273 aa	Predicted RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	FAM83F	Q8NEG4	500 aa	Predicted RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	UBTD2	Q8WUN7	234 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	LINC00476	Q8WZB0	136 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	ELMO1	Q92556	727 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	MRGPRF	Q96AM1	343 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	COQ8B	Q96D53	544 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	RNF183	Q96D59	192 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	FAM122A	Q96E09	287 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	ZNF582	Q96NG8	517 aa	Predicted RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	GUCD1	Q96NT3	240 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	ACCS	Q96QU6	501 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	TGS1	Q96RS0	853 aa	Known RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	SLC22A12	Q96S37	553 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	C9orf16	Q9BUW7	83 aa		3.89	□□□□□ -1.79
USP44-208	ENST00000552440	TRMT61B	Q9BVS5	477 aa	Known RBP	3.89	□□□□□ -1.79
USP44-208	ENST00000552440	PRRG3	Q9BZD7	231 aa		3.89	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms