RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CHRNB4P30926 498 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 IGLV3-21P80748 117 aaPredicted RBP12.16□□□□□ -0.46
RTN3-213ENST00000543552 TNFRSF17Q02223 184 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 DLG1Q12959 904 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 ACAP2Q15057 778 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 MROH9Q5TGP6 573 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 ZDHHC24Q6UX98 284 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 SYT10Q6XYQ8 523 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 C16orf47Q6ZP98 133 aaPredicted RBP12.16□□□□□ -0.46
RTN3-213ENST00000543552 FAM47EQ6ZV65 393 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 ACAD11Q709F0 780 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 TAOK1Q7L7X3 1001 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 ZNF572Q7Z3I7 529 aaPredicted RBP12.16□□□□□ -0.46
RTN3-213ENST00000543552 FAM109AQ8N4B1 249 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 NUBPLQ8TB37 319 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 KCTD4Q8WVF5 259 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 RND1Q92730 232 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 NXNL1Q96CM4 212 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 FBXL20Q96IG2 436 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 LURAP1Q96LR2 239 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 TTTY12Q9BZ98 90 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 TSPYL1Q9H0U9 437 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 OR51B5Q9H339 312 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 ZDHHC11Q9H8X9 412 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 LIN28AQ9H9Z2 209 aaKnown RBP12.16□□□□□ -0.46
RTN3-213ENST00000543552 WDR41Q9HAD4 459 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 IL1RL2Q9HB29 575 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 SNX15Q9NRS6 342 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 FAM166BA8MTA8 275 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 H0YIV9 168 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 PLPP1O14494 284 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 BCKDKO14874 412 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 FGF17O60258 216 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 OR10H2O60403 315 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 SH3BGRLO75368 114 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 PDE9AO76083 593 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 KLHL2O95198 593 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 C2P06681 752 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 ALOX15P16050 662 aaPredicted RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 CNR1P21554 472 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 ID2Q02363 134 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 UAP1Q16222 522 aaPredicted RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 PFKFB4Q16877 469 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 C10orf62Q5T681 223 aaPredicted RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 CYP20A1Q6UW02 462 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 SLC29A4Q7RTT9 530 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 ST13P4Q8IZP2 240 aaPredicted RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 CENPLQ8N0S6 344 aaPredicted RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 SLC15A4Q8N697 577 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 OR52N2Q8NGI0 321 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 ANKRD9Q96BM1 317 aaPredicted RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 C14orf79Q96F83 325 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 SENP5Q96HI0 755 aaPredicted RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 SCYL1Q96KG9 808 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 MTERF1Q99551 399 aaKnown RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 DEFB127Q9H1M4 99 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 DEPPQ9NTK1 212 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 MTRF1LQ9UGC7 380 aaKnown RBP12.15□□□□□ -0.46
RTN3-213ENST00000543552 TMCO1Q9UM00 188 aa12.15□□□□□ -0.46
RTN3-213ENST00000543552 A0A096LPK6 155 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 IQANK1A0A1B0GTG1 560 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 MYOCOSA0A1B0GUC4 107 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 OR6C76A6NM76 312 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 FOXO6A8MYZ6 492 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 FAM47E-STBD1D6RA91 191 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 ZNHIT1O43257 154 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 GLSO94925 669 aaPredicted RBP12.14□□□□□ -0.47
RTN3-213ENST00000543552 ETHE1O95571 254 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 IGKV3-11P04433 115 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 NR2F6P10588 404 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 MTHFD2P13995 350 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 CAPN3P20807 821 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 TYK2P29597 1187 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 ARL1P40616 181 aaPredicted RBP12.14□□□□□ -0.47
RTN3-213ENST00000543552 IRF9Q00978 393 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 GUCY2DQ02846 1103 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 FOLH1Q04609 750 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 ASPHQ12797 758 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 CUL3Q13618 768 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 GTF2H2Q13888 395 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 PCBP2Q15366 365 aaKnown RBP eCLIP12.14□□□□□ -0.473e-35■■■■■ 31.2
RTN3-213ENST00000543552 PIGGQ5H8A4 983 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 GTF2H2CQ6P1K8 395 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 MEX3BQ6ZN04 569 aaKnown RBP12.14□□□□□ -0.47
RTN3-213ENST00000543552 NCCRP1Q6ZVX7 275 aaPredicted RBP12.14□□□□□ -0.47
RTN3-213ENST00000543552 NUDT13Q86X67 352 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 ZNF321PQ8N8H1 164 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 OR5M3Q8NGP4 307 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 ZNF721Q8TF20 911 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 MRRFQ96E11 262 aaKnown RBP12.14□□□□□ -0.47
RTN3-213ENST00000543552 SMC6Q96SB8 1091 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 IPPKQ9H8X2 491 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 SLC24A3Q9HC58 644 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 PSD3Q9NYI0 1048 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 CPSF2Q9P2I0 782 aaKnown RBP12.14□□□□□ -0.47
RTN3-213ENST00000543552 BOKQ9UMX3 212 aaPredicted RBP12.14□□□□□ -0.47
RTN3-213ENST00000543552 IKBKGQ9Y6K9 419 aa12.14□□□□□ -0.47
RTN3-213ENST00000543552 PDZD2O15018 2839 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 ESYT3A0FGR9 886 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 NPIPA2E9PIF3 369 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms