RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 FIGNL2A6NMB9 653 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 SAP18O00422 153 aaKnown RBP12.16□□□□□ -0.46
RTN3-212ENST00000543123 ADAM10O14672 748 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 CHRNB4P30926 498 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 IGLV3-21P80748 117 aaPredicted RBP12.16□□□□□ -0.46
RTN3-212ENST00000543123 TNFRSF17Q02223 184 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 DLG1Q12959 904 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 ACAP2Q15057 778 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 MROH9Q5TGP6 573 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 ZDHHC24Q6UX98 284 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 SYT10Q6XYQ8 523 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 C16orf47Q6ZP98 133 aaPredicted RBP12.16□□□□□ -0.46
RTN3-212ENST00000543123 FAM47EQ6ZV65 393 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 ACAD11Q709F0 780 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 TAOK1Q7L7X3 1001 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 ZNF572Q7Z3I7 529 aaPredicted RBP12.16□□□□□ -0.46
RTN3-212ENST00000543123 FAM109AQ8N4B1 249 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 NUBPLQ8TB37 319 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 KCTD4Q8WVF5 259 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 RND1Q92730 232 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 NXNL1Q96CM4 212 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 FBXL20Q96IG2 436 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 LURAP1Q96LR2 239 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 TTTY12Q9BZ98 90 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 TSPYL1Q9H0U9 437 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 OR51B5Q9H339 312 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 ZDHHC11Q9H8X9 412 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 LIN28AQ9H9Z2 209 aaKnown RBP12.16□□□□□ -0.46
RTN3-212ENST00000543123 WDR41Q9HAD4 459 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 IL1RL2Q9HB29 575 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 SNX15Q9NRS6 342 aa12.16□□□□□ -0.46
RTN3-212ENST00000543123 FAM166BA8MTA8 275 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 H0YIV9 168 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 PLPP1O14494 284 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 BCKDKO14874 412 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 FGF17O60258 216 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 OR10H2O60403 315 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 SH3BGRLO75368 114 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 PDE9AO76083 593 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 KLHL2O95198 593 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 C2P06681 752 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 ALOX15P16050 662 aaPredicted RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 CNR1P21554 472 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 ID2Q02363 134 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 UAP1Q16222 522 aaPredicted RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 PFKFB4Q16877 469 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 C10orf62Q5T681 223 aaPredicted RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 CYP20A1Q6UW02 462 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 SLC29A4Q7RTT9 530 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 ST13P4Q8IZP2 240 aaPredicted RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 CENPLQ8N0S6 344 aaPredicted RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 SLC15A4Q8N697 577 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 OR52N2Q8NGI0 321 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 ANKRD9Q96BM1 317 aaPredicted RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 C14orf79Q96F83 325 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 SENP5Q96HI0 755 aaPredicted RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 SCYL1Q96KG9 808 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 MTERF1Q99551 399 aaKnown RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 DEFB127Q9H1M4 99 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 DEPPQ9NTK1 212 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 MTRF1LQ9UGC7 380 aaKnown RBP12.15□□□□□ -0.46
RTN3-212ENST00000543123 TMCO1Q9UM00 188 aa12.15□□□□□ -0.46
RTN3-212ENST00000543123 A0A096LPK6 155 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 IQANK1A0A1B0GTG1 560 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 MYOCOSA0A1B0GUC4 107 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 OR6C76A6NM76 312 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 FOXO6A8MYZ6 492 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 FAM47E-STBD1D6RA91 191 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 ZNHIT1O43257 154 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 GLSO94925 669 aaPredicted RBP12.14□□□□□ -0.47
RTN3-212ENST00000543123 ETHE1O95571 254 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 IGKV3-11P04433 115 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 NR2F6P10588 404 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 MTHFD2P13995 350 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 CAPN3P20807 821 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 TYK2P29597 1187 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 ARL1P40616 181 aaPredicted RBP12.14□□□□□ -0.47
RTN3-212ENST00000543123 IRF9Q00978 393 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 GUCY2DQ02846 1103 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 FOLH1Q04609 750 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 ASPHQ12797 758 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 CUL3Q13618 768 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 GTF2H2Q13888 395 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 PCBP2Q15366 365 aaKnown RBP eCLIP12.14□□□□□ -0.473e-35■■■■■ 31.2
RTN3-212ENST00000543123 PIGGQ5H8A4 983 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 GTF2H2CQ6P1K8 395 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 MEX3BQ6ZN04 569 aaKnown RBP12.14□□□□□ -0.47
RTN3-212ENST00000543123 NCCRP1Q6ZVX7 275 aaPredicted RBP12.14□□□□□ -0.47
RTN3-212ENST00000543123 NUDT13Q86X67 352 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 ZNF321PQ8N8H1 164 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 OR5M3Q8NGP4 307 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 ZNF721Q8TF20 911 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 MRRFQ96E11 262 aaKnown RBP12.14□□□□□ -0.47
RTN3-212ENST00000543123 SMC6Q96SB8 1091 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 IPPKQ9H8X2 491 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 SLC24A3Q9HC58 644 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 PSD3Q9NYI0 1048 aa12.14□□□□□ -0.47
RTN3-212ENST00000543123 CPSF2Q9P2I0 782 aaKnown RBP12.14□□□□□ -0.47
RTN3-212ENST00000543123 BOKQ9UMX3 212 aaPredicted RBP12.14□□□□□ -0.47
RTN3-212ENST00000543123 IKBKGQ9Y6K9 419 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms