RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TMEM205Q6UW68 189 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 CPLX4Q7Z7G2 160 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 RAB43Q86YS6 212 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 MMP21Q8N119 569 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 ZSCAN1Q8NBB4 408 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 CLHC1Q8NHS4 586 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 UCN3Q969E3 161 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 ANKRD9Q96BM1 317 aaPredicted RBP16.08■□□□□ 0.16
LIG1-204ENST00000542460 RILPQ96NA2 401 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 TMEM120AQ9BXJ8 343 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 MIEF1Q9NQG6 463 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 NECTIN3Q9NQS3 549 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 AIG1Q9NVV5 245 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 CES1P1Q9UKY3 287 aa16.08■□□□□ 0.16
LIG1-204ENST00000542460 APC2O95996 2303 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 A0A087WV48 116 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 SRRM3A6NNA2 597 aaPredicted RBP16.07■□□□□ 0.16
LIG1-204ENST00000542460 WASHC1A8K0Z3 465 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 ZNF891A8MT65 544 aaPredicted RBP16.07■□□□□ 0.16
LIG1-204ENST00000542460 EFSO43281 561 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 FGF17O60258 216 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 GPR75O95800 540 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 IDO1P14902 403 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 WT1P19544 449 aaPredicted RBP16.07■□□□□ 0.16
LIG1-204ENST00000542460 PRPS1L1P21108 318 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 OTX2P32243 289 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 ARFIP2P53365 341 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 FOLH1Q04609 750 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 TLE3Q04726 772 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 IL10RAQ13651 578 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 SERTAD2Q14140 314 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 GSTA3Q16772 222 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 TMEM198Q66K66 360 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 CCDC81Q6ZN84 652 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 OR4N5Q8IXE1 308 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 OR4K14Q8NGD5 310 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 TSLPQ969D9 159 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 GFM2Q969S9 779 aaKnown RBP16.07■□□□□ 0.16
LIG1-204ENST00000542460 MTERF3Q96E29 417 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 VPS50Q96JG6 964 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 IP6K3Q96PC2 410 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 ALOXE3Q9BYJ1 711 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 REEP4Q9H6H4 257 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 C19orf25Q9UFG5 118 aaPredicted RBP16.07■□□□□ 0.16
LIG1-204ENST00000542460 MAPRE3Q9UPY8 281 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 EXO1Q9UQ84 846 aaKnown RBP16.07■□□□□ 0.16
LIG1-204ENST00000542460 CLDN16Q9Y5I7 305 aa16.07■□□□□ 0.16
LIG1-204ENST00000542460 TCRBV16S1A1N1A0A5B0 115 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 E9PBE3 544 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 AKAP10O43572 662 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 KLHL41O60662 606 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 LRATO95237 230 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 FURINP09958 794 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 PIK3R1P27986 724 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 RPL3P39023 403 aaKnown RBP16.06■□□□□ 0.16
LIG1-204ENST00000542460 UCNP55089 124 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 CLDN8P56748 225 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 IGLV3-21P80748 117 aaPredicted RBP16.06■□□□□ 0.16
LIG1-204ENST00000542460 RPS6KA2Q15349 733 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 R3HCC1LQ7Z5L2 792 aaKnown RBP16.06■□□□□ 0.16
LIG1-204ENST00000542460 PPP1R32Q7Z5V6 425 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 ANKRD37Q7Z713 158 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 TICAM1Q8IUC6 712 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 ADAMTS17Q8TE56 1095 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 ZNF764Q96H86 408 aaPredicted RBP16.06■□□□□ 0.16
LIG1-204ENST00000542460 BRINP2Q9C0B6 783 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 TAS2R7Q9NYW3 318 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 C5AR2Q9P296 337 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 UTS2RQ9UKP6 389 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 TRIM33Q9UPN9 1127 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 GPR45Q9Y5Y3 372 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 HS3ST3B1Q9Y662 390 aa16.06■□□□□ 0.16
LIG1-204ENST00000542460 LOC102723996A0A087X1L8 192 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 TGFBR3LH3BV60 316 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 SOCS6O14544 535 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 NKX2-8O15522 239 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 TBX19O60806 448 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 ERAL1O75616 437 aaKnown RBP16.05■□□□□ 0.16
LIG1-204ENST00000542460 DRD4P21917 467 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 HPCAL1P37235 193 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 C21orf58P58505 322 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 ID2Q02363 134 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 PDE7AQ13946 482 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 METTL21CQ5VZV1 264 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 KIRREL2Q6UWL6 708 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 LANCL3Q6ZV70 420 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 SAMD14Q8IZD0 417 aaPredicted RBP16.05■□□□□ 0.16
LIG1-204ENST00000542460 KLHL29Q96CT2 875 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 DPY30Q9C005 99 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 FAM107BQ9H098 131 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 EPN3Q9H201 632 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 ZNF780BQ9Y6R6 833 aa16.05■□□□□ 0.16
LIG1-204ENST00000542460 CDC14CA4D256 554 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 GABRR3A8MPY1 467 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 ANKRD28O15084 1053 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 SCAMP2O15127 329 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 SHOX2O60902 331 aaPredicted RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 DDX5P17844 614 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 XKP51811 444 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 OR4D2P58180 307 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms