RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 RPS6KA2Q15349 733 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 SPANXN3Q5MJ09 141 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 CELF3Q5SZQ8 465 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 CPZQ66K79 652 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 OR5M10Q6IEU7 315 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 C17orf99Q6UX52 265 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 TAC4Q86UU9 113 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 NAA40Q86UY6 237 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ANKRD46Q86W74 232 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 PHYKPLQ8IUZ5 450 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 OR4N4Q8N0Y3 316 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 OR10J5Q8NHC4 309 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 HTR3CQ8WXA8 447 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 SLC25A46Q96AG3 418 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 TADA1Q96BN2 335 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ULK4Q96C45 1275 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 OTUB1Q96FW1 271 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 HBEGFQ99075 208 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 DDOQ99489 341 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 TSNAXQ99598 290 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 GPR22Q99680 433 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 GABARAPL1Q9H0R8 117 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 DUSP15Q9H1R2 295 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 NUDT15Q9NV35 164 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 PPP4R1LQ9P1A2 415 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF624Q9P2J8 865 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 PLEKHB1Q9UF11 243 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 USP18Q9UMW8 372 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 IRAK3Q9Y616 596 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 LCTP09848 1927 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 BTBD17A6NE02 478 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 SGK494L7N484 410 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ARNTLO00327 626 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 DCLK1O15075 740 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 OIP5O43482 229 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 LCMT2O60294 686 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 LILRB3O75022 631 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 OR4F21O95013 312 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ATG7O95352 703 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 SLC34A2O95436 690 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 SULT1A3P0DMM9 295 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 SULT1A4P0DMN0 295 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ADRB3P13945 408 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 C4BPBP20851 252 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 GNALP38405 381 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ZFP36L2P47974 494 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 HSPA7P48741 367 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 INPP1P49441 399 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 PLK1P53350 603 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 EPHA4P54764 986 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 WNT7BP56706 349 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 TLE2Q04725 743 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF155Q12901 538 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 MXD4Q14582 209 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 GUCA2BQ16661 112 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 DUOXA2Q1HG44 320 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF628Q5EBL2 1059 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF57Q68EA5 555 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 OR4F3Q6IEY1 312 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 MOXD1Q6UVY6 613 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 UNQ6494/PRO21346Q6UXR6 183 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 SERPINA12Q8IW75 414 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 CRYGNQ8WXF5 182 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 TEFMQ96QE5 360 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 HHIPQ96QV1 700 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 JAM3Q9BX67 310 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 TGIF2Q9GZN2 237 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 PLCXD1Q9NUJ7 323 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 AKAP7Q9P0M2 348 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 WRAP73Q9P2S5 460 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 METTL1Q9UBP6 276 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 CNTN6Q9UQ52 1028 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 CA5BQ9Y2D0 317 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 PLXNB2O15031 1838 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 CACNB4O00305 520 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-214ENST00000540539 SEMA7AO75326 666 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 SIX3O95343 332 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-214ENST00000540539 LGI1O95970 557 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 VIPP01282 170 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 GABRB1P18505 474 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 RAB4AP20338 218 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 CYP2B6P20813 491 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 SREBF1P36956 1147 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 DIO3P55073 304 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 STARD6P59095 220 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 UBE2IP63279 158 aaKnown RBP9.03□□□□□ -0.96
CLIP1-214ENST00000540539 DCDP81605 110 aaKnown RBP9.03□□□□□ -0.96
CLIP1-214ENST00000540539 ST3GAL4Q11206 333 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 SGCGQ13326 291 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 GPR176Q14439 515 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 KIAA0319Q5VV43 1072 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 LIPJQ5W064 366 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 TCEAL6Q6IPX3 200 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 CNIH2Q6PI25 160 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 PLEKHH3Q7Z736 793 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 DCUN1D3Q8IWE4 304 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 PRSS58Q8IYP2 241 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 POMGNT2Q8NAT1 580 aa9.03□□□□□ -0.96
CLIP1-214ENST00000540539 OR6B3Q8NGW1 331 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms