RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 CPN2P22792 545 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 MSH2P43246 934 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 IST1P53990 364 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 PCDH1Q08174 1060 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 ASPHQ12797 758 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 CHIT1Q13231 466 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 OR4D1Q15615 310 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 AP5B1Q2VPB7 878 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 ARSKQ6UWY0 536 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 CYS1Q717R9 158 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 C9orf40Q8IXQ3 194 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 ZBED8Q8IZ13 594 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 BBOF1Q8ND07 529 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 CDKL2Q92772 493 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 ESAMQ96AP7 390 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 RBM18Q96H35 190 aaKnown RBP11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 SENP5Q96HI0 755 aaPredicted RBP11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 UBXN10Q96LJ8 280 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 DGAT2Q96PD7 388 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 GPR22Q99680 433 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 TMUB1Q9BVT8 246 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 PHACTR1Q9C0D0 580 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 ZNF703Q9H7S9 590 aaPredicted RBP11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 ACKR4Q9NPB9 350 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 SMYD2Q9NRG4 433 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 CD274Q9NZQ7 290 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 TXNDC16Q9P2K2 825 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 ADGRE2Q9UHX3 823 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 BOKQ9UMX3 212 aaPredicted RBP11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 MTORP42345 2549 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 SPG11Q96JI7 2443 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 ZNF407Q9C0G0 2248 aa11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 PHF3Q92576 2039 aaKnown RBP11.08□□□□□ -0.64
CBX3P4-202ENST00000540428 EFCAB8A8MWE9 144 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 RTCAO00442 366 aaKnown RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 PHGDHO43175 533 aaKnown RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 FGF17O60258 216 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 CTAG2O75638 210 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 S100BP04271 92 aaPredicted RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 ENDOUP21128 410 aaKnown RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 PIGAP37287 484 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 ADH7P40394 386 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 SSR2P43308 183 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 ARFIP1P53367 373 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 DLX5P56178 289 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 PLIN5Q00G26 463 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 ID2Q02363 134 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 ZKSCAN8Q15776 578 aaPredicted RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 FBXO48Q5FWF7 155 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 DEPDC1Q5TB30 811 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 MED27Q6P2C8 311 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 ADGRD1Q6QNK2 874 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 LYPD8Q6UX82 237 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 CREG2Q8IUH2 290 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 LIX1LQ8IVB5 337 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 LRRC25Q8N386 305 aaPredicted RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 FBXW8Q8N3Y1 598 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 SPATA6LQ8N4H0 392 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 CHDHQ8NE62 594 aaPredicted RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 PYROXD1Q8WU10 500 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 SREK1Q8WXA9 508 aaKnown RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 TANKQ92844 425 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 SPACA9Q96E40 222 aaPredicted RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 CMTM7Q96FZ5 175 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 FBXL20Q96IG2 436 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 KRT12Q99456 494 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 RBBP8Q99708 897 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 CPNE1Q99829 537 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 PELOQ9BRX2 385 aaKnown RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 CD244Q9BZW8 370 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 EXO5Q9H790 373 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 CAB39LQ9H9S4 337 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 ZFP64Q9NPA5 681 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 SEMA4BQ9NPR2 832 aaPredicted RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 DNAJB12Q9NXW2 375 aaKnown RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 CNIH4Q9P003 139 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 PHF11Q9UIL8 331 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 RNF112Q9ULX5 631 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 EDARQ9UNE0 448 aa11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 SETD2Q9BYW2 2564 aaPredicted RBP11.07□□□□□ -0.64
CBX3P4-202ENST00000540428 HSPB2A8KAH6 182 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 EIF3HO15372 352 aaKnown RBP eCLIP11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 NADKO95544 446 aaPredicted RBP11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 TGFB1P01137 390 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 FBXO45P0C2W1 286 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 CD99P14209 185 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 SERPINB3P29508 390 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 TLX1P31314 330 aaPredicted RBP11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 GP5P40197 560 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 RAB10P61026 200 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 KCNJ2P63252 427 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 SLAMF1Q13291 335 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 HSPB2Q16082 182 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 SPRED3Q2MJR0 410 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 TBCELQ5QJ74 424 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 KHDRBS2Q5VWX1 349 aaKnown RBP11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 OR4C11Q6IEV9 310 aa11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 ST13P4Q8IZP2 240 aaPredicted RBP11.06□□□□□ -0.64
CBX3P4-202ENST00000540428 ZCCHC7Q8N3Z6 543 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms