RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 SLC36A3Q495N2 470 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 TMEM69Q5SWH9 247 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 UNQ6126/PRO20091Q6UXV3 157 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 TIFABQ6ZNK6 161 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ARHGAP12Q8IWW6 846 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ZDHHC14Q8IZN3 488 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 CENPSQ8N2Z9 138 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 FTMTQ8N4E7 242 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 TRAM1L1Q8N609 369 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ASCC1Q8N9N2 400 aaKnown RBP10.23□□□□□ -0.77
CLIP1-209ENST00000537178 DCAF4L2Q8NA75 395 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 NLGN2Q8NFZ4 835 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 OR5M3Q8NGP4 307 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ABHD5Q8WTS1 349 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 WDR77Q9BQA1 342 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-209ENST00000537178 COPZ2Q9P299 210 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 KCNS2Q9ULS6 477 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ERVK-19Q9WJR5 959 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 KCNK6Q9Y257 313 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 H0YAE9 185 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 UQCRC2P22695 453 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 SHMT2P34897 504 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 RABGGTBP53611 331 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 GPM6BQ13491 265 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 OR2T33Q8NG76 320 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 SH3YL1Q96HL8 342 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-209ENST00000537178 G6PC3Q9BUM1 346 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 CD244Q9BZW8 370 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 SMOC2Q9H3U7 446 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 UNKLQ9H9P5 680 aaKnown RBP10.23□□□□□ -0.77
CLIP1-209ENST00000537178 LIPT1Q9Y234 373 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ZNF175Q9Y473 711 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 BACE2Q9Y5Z0 518 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 FAAHO00519 579 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 GRID2O43424 1007 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 HTRA2O43464 458 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-209ENST00000537178 PRKYO43930 277 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 MMP20O60882 483 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 FHP07954 510 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 IL1R2P27930 398 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 FGL1Q08830 312 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 CLCA4Q14CN2 919 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 TGFBIQ15582 683 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 GPRC6AQ5T6X5 926 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 PPP2R2DQ66LE6 453 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 PIM3Q86V86 326 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 PDSS2Q86YH6 399 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 PHTF2Q8N3S3 785 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 FBXL20Q96IG2 436 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 TMEM185BQ9H7F4 350 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 SIX2Q9NPC8 291 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 RNF11Q9Y3C5 154 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 GOLGB1Q14789 3259 aaKnown RBP10.23□□□□□ -0.77
CLIP1-209ENST00000537178 SOWAHBA6NEL2 793 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 LRRTM2O43300 516 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 VNN1O95497 513 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 EPOP01588 193 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 UAP1L1Q3KQV9 507 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 FLYWCH1Q4VC44 716 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ZNF675Q8TD23 568 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 OR5P2Q8WZ92 322 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 SLC6A7Q99884 636 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 POPDC3Q9HBV1 291 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ACSL5Q9ULC5 683 aa10.23□□□□□ -0.77
CLIP1-209ENST00000537178 ZFR2Q9UPR6 939 aaKnown RBP10.23□□□□□ -0.77
CLIP1-209ENST00000537178 SLC35F4A4IF30 521 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 J3KR12 359 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 ZNF821O75541 412 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-209ENST00000537178 PIGRP01833 764 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 CAPN3P20807 821 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 HRH2P25021 359 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 ACVRL1P37023 503 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 MAGEA3P43357 314 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 LUMP51884 338 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-209ENST00000537178 FADDQ13158 208 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 SPRYD7Q5W111 196 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 ATG9BQ674R7 924 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 C22orf39Q6P5X5 142 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 LHFPL3Q86UP9 236 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 DNAAF1Q8NEP3 725 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 OR8J1Q8NGP2 316 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 THAP4Q8WY91 577 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 RAB8BQ92930 207 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 SLC25A44Q96H78 314 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-209ENST00000537178 PBDC1Q9BVG4 233 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 EIF5A2Q9GZV4 153 aaKnown RBP10.22□□□□□ -0.77
CLIP1-209ENST00000537178 KCNH6Q9H252 994 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 FN3KQ9H479 309 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 DHDHQ9UQ10 334 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 TCRBV7S3A2A0A539 114 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 SMIM30A4D0T7 59 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 FAM221BA6H8Z2 402 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 A8MU76 341 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 LDB2O43679 373 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 ADH7P40394 386 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 PAFAH1B3Q15102 231 aaKnown RBP10.22□□□□□ -0.77
CLIP1-209ENST00000537178 ITPRIPL2Q3MIP1 535 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 CCDC58Q4VC31 144 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 PLEKHS1Q5SXH7 462 aa10.22□□□□□ -0.77
CLIP1-209ENST00000537178 NRROSQ86YC3 692 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms