RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 ZCCHC7Q8N3Z6 543 aaKnown RBP12.17□□□□□ -0.46
RTN3-207ENST00000536011 TEX9Q8N6V9 391 aa12.17□□□□□ -0.46
RTN3-207ENST00000536011 HUS1BQ8NHY5 278 aa12.17□□□□□ -0.46
RTN3-207ENST00000536011 SLC22A8Q8TCC7 542 aa12.17□□□□□ -0.46
RTN3-207ENST00000536011 CHTF18Q8WVB6 975 aa12.17□□□□□ -0.46
RTN3-207ENST00000536011 RBM18Q96H35 190 aaKnown RBP12.17□□□□□ -0.46
RTN3-207ENST00000536011 TRIM8Q9BZR9 551 aa12.17□□□□□ -0.46
RTN3-207ENST00000536011 RPF2Q9H7B2 306 aaKnown RBP12.17□□□□□ -0.46
RTN3-207ENST00000536011 DMRT3Q9NQL9 472 aa12.17□□□□□ -0.46
RTN3-207ENST00000536011 SACM1LQ9NTJ5 587 aa12.17□□□□□ -0.46
RTN3-207ENST00000536011 LYARQ9NX58 379 aaKnown RBP12.17□□□□□ -0.46
RTN3-207ENST00000536011 CACNA1CQ13936 2221 aa12.17□□□□□ -0.46
RTN3-207ENST00000536011 OR14I1A6ND48 311 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 FIGNL2A6NMB9 653 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 SAP18O00422 153 aaKnown RBP12.16□□□□□ -0.46
RTN3-207ENST00000536011 ADAM10O14672 748 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 CHRNB4P30926 498 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 IGLV3-21P80748 117 aaPredicted RBP12.16□□□□□ -0.46
RTN3-207ENST00000536011 TNFRSF17Q02223 184 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 DLG1Q12959 904 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 ACAP2Q15057 778 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 MROH9Q5TGP6 573 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 ZDHHC24Q6UX98 284 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 SYT10Q6XYQ8 523 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 C16orf47Q6ZP98 133 aaPredicted RBP12.16□□□□□ -0.46
RTN3-207ENST00000536011 FAM47EQ6ZV65 393 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 ACAD11Q709F0 780 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 TAOK1Q7L7X3 1001 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 ZNF572Q7Z3I7 529 aaPredicted RBP12.16□□□□□ -0.46
RTN3-207ENST00000536011 FAM109AQ8N4B1 249 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 NUBPLQ8TB37 319 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 KCTD4Q8WVF5 259 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 RND1Q92730 232 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 NXNL1Q96CM4 212 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 FBXL20Q96IG2 436 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 LURAP1Q96LR2 239 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 TTTY12Q9BZ98 90 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 TSPYL1Q9H0U9 437 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 OR51B5Q9H339 312 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 ZDHHC11Q9H8X9 412 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 LIN28AQ9H9Z2 209 aaKnown RBP12.16□□□□□ -0.46
RTN3-207ENST00000536011 WDR41Q9HAD4 459 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 IL1RL2Q9HB29 575 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 SNX15Q9NRS6 342 aa12.16□□□□□ -0.46
RTN3-207ENST00000536011 FAM166BA8MTA8 275 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 H0YIV9 168 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 PLPP1O14494 284 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 BCKDKO14874 412 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 FGF17O60258 216 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 OR10H2O60403 315 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 SH3BGRLO75368 114 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 PDE9AO76083 593 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 KLHL2O95198 593 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 C2P06681 752 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 ALOX15P16050 662 aaPredicted RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 CNR1P21554 472 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 ID2Q02363 134 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 UAP1Q16222 522 aaPredicted RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 PFKFB4Q16877 469 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 C10orf62Q5T681 223 aaPredicted RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 CYP20A1Q6UW02 462 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 SLC29A4Q7RTT9 530 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 ST13P4Q8IZP2 240 aaPredicted RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 CENPLQ8N0S6 344 aaPredicted RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 SLC15A4Q8N697 577 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 OR52N2Q8NGI0 321 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 ANKRD9Q96BM1 317 aaPredicted RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 C14orf79Q96F83 325 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 SENP5Q96HI0 755 aaPredicted RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 SCYL1Q96KG9 808 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 MTERF1Q99551 399 aaKnown RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 DEFB127Q9H1M4 99 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 DEPPQ9NTK1 212 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 MTRF1LQ9UGC7 380 aaKnown RBP12.15□□□□□ -0.46
RTN3-207ENST00000536011 TMCO1Q9UM00 188 aa12.15□□□□□ -0.46
RTN3-207ENST00000536011 A0A096LPK6 155 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 IQANK1A0A1B0GTG1 560 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 MYOCOSA0A1B0GUC4 107 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 OR6C76A6NM76 312 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 FOXO6A8MYZ6 492 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 FAM47E-STBD1D6RA91 191 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 ZNHIT1O43257 154 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 GLSO94925 669 aaPredicted RBP12.14□□□□□ -0.47
RTN3-207ENST00000536011 ETHE1O95571 254 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 IGKV3-11P04433 115 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 NR2F6P10588 404 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 MTHFD2P13995 350 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 CAPN3P20807 821 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 TYK2P29597 1187 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 ARL1P40616 181 aaPredicted RBP12.14□□□□□ -0.47
RTN3-207ENST00000536011 IRF9Q00978 393 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 GUCY2DQ02846 1103 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 FOLH1Q04609 750 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 ASPHQ12797 758 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 CUL3Q13618 768 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 GTF2H2Q13888 395 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 PCBP2Q15366 365 aaKnown RBP eCLIP12.14□□□□□ -0.473e-35■■■■■ 31.2
RTN3-207ENST00000536011 PIGGQ5H8A4 983 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 GTF2H2CQ6P1K8 395 aa12.14□□□□□ -0.47
RTN3-207ENST00000536011 MEX3BQ6ZN04 569 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms