RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 CKAP4Q07065 602 aaKnown RBP10.49□□□□□ -0.73
VPS28-214ENST00000531032 AP5B1Q2VPB7 878 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 ZNF791Q3KP31 576 aaPredicted RBP10.49□□□□□ -0.73
VPS28-214ENST00000531032 PIGGQ5H8A4 983 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 KHDRBS2Q5VWX1 349 aaKnown RBP10.49□□□□□ -0.73
VPS28-214ENST00000531032 MED27Q6P2C8 311 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 CHSY3Q70JA7 882 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 ISCA2Q86U28 154 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 SPATA4Q8NEY3 305 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 OR7G3Q8NG95 312 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 OR5M9Q8NGP3 310 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 STAG3L4Q8TBR4 150 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 EXT2Q93063 718 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 SENP5Q96HI0 755 aaPredicted RBP10.49□□□□□ -0.73
VPS28-214ENST00000531032 TTYH2Q9BSA4 534 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 PHACTR1Q9C0D0 580 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 RAB17Q9H0T7 212 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 ALG9Q9H6U8 611 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 SH2D2AQ9NP31 389 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 NUDT4Q9NZJ9 180 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 WHRNQ9P202 907 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 KCNN3Q9UGI6 736 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 UTP11Q9Y3A2 253 aaKnown RBP10.49□□□□□ -0.73
VPS28-214ENST00000531032 ATG4BQ9Y4P1 393 aa10.49□□□□□ -0.73
VPS28-214ENST00000531032 K7EPI3 171 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 RAD51CO43502 376 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 KLK8O60259 260 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 KERAO60938 352 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 NADKO95544 446 aaPredicted RBP10.48□□□□□ -0.73
VPS28-214ENST00000531032 TGFB1P01137 390 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 P04436 131 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 CELA3AP09093 270 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 GSTA2P09210 222 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 SLC35E2BP0CK96 405 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 GLI4P10075 376 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 PCNAP12004 261 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 CPN2P22792 545 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 SPRP35270 261 aaPredicted RBP10.48□□□□□ -0.73
VPS28-214ENST00000531032 GMPRP36959 345 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 SSR2P43308 183 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 GPX6P59796 221 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 PLIN5Q00G26 463 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 ASPHQ12797 758 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 DLG1Q12959 904 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 BIKQ13323 160 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 DEPDC1Q5TB30 811 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 RTL6Q6ICC9 239 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 OR4C11Q6IEV9 310 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 GRHL2Q6ISB3 625 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 ZNF585AQ6P3V2 769 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 ADGRD1Q6QNK2 874 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 LYPD8Q6UX82 237 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 B3GNT6Q6ZMB0 384 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 C3orf62Q6ZUJ4 267 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 C9orf40Q8IXQ3 194 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 CMTM7Q96FZ5 175 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 DGAT2Q96PD7 388 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 ATOH8Q96SQ7 321 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 ERP44Q9BS26 406 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 RPF2Q9H7B2 306 aaKnown RBP10.48□□□□□ -0.73
VPS28-214ENST00000531032 SLC24A3Q9HC58 644 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 MS4A12Q9NXJ0 267 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 TUBA8Q9NY65 449 aaPredicted RBP10.48□□□□□ -0.73
VPS28-214ENST00000531032 GRHL1Q9NZI5 618 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 OPTCQ9UBM4 332 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 ADGRE2Q9UHX3 823 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 SPG11Q96JI7 2443 aa10.48□□□□□ -0.73
VPS28-214ENST00000531032 SETD2Q9BYW2 2564 aaPredicted RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 ATP6AP2A0A1C7CYW4 349 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SUPT3HB4E1H0 165 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 UBXN8O00124 270 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SAP18O00422 153 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 HCN1O60741 890 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 WDR1O75083 606 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SH3BGRLO75368 114 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SUPT3HO75486 399 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 ATP6AP2O75787 350 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 ENDOUP21128 410 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 PIGAP37287 484 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 PIK3CBP42338 1070 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 ZFP36L2P47974 494 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 MAN2A2P49641 1150 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 ARFIP1P53367 373 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 TNFRSF17Q02223 184 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 FOLH1Q04609 750 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 TBL3Q12788 808 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 SLAMF1Q13291 335 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SLC10A1Q14973 349 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 GRTP1Q5TC63 336 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 DGAT2L6Q6ZPD8 337 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 CMC1Q7Z7K0 106 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 CCDC25Q86WR0 208 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 OR4N5Q8IXE1 308 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 DND1Q8IYX4 353 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 CLYBLQ8N0X4 340 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 ZCCHC7Q8N3Z6 543 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 SLC15A4Q8N697 577 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 OR10Q1Q8NGQ4 319 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 HUS1BQ8NHY5 278 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SLC22A8Q8TCC7 542 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms