RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 GIT2Q14161 759 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 SLC17A1Q14916 467 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 OR1C1Q15619 314 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 TMEM44Q2T9K0 475 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 AARDQ4LEZ3 155 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 EIPR1Q53HC9 387 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 ZNF506Q5JVG8 444 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 C1QTNF12Q5T7M4 302 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 TMEM270Q6UE05 265 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 CD164L2Q6UWJ8 174 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 PRSS42Q7Z5A4 293 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 MARCH9Q86YJ5 346 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 HPS6Q86YV9 775 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 CCDC71Q8IV32 467 aaPredicted RBP3.38□□□□□ -1.87
CD44-215ENST00000525241 TCP11Q8WWU5 503 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 BCL2L2Q92843 193 aaPredicted RBP3.38□□□□□ -1.87
CD44-215ENST00000525241 MRPL24Q96A35 216 aaKnown RBP3.38□□□□□ -1.87
CD44-215ENST00000525241 VMP1Q96GC9 406 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 RUNDC3BQ96NL0 473 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 AGPAT1Q99943 283 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 RBM24Q9BX46 236 aaKnown RBP3.38□□□□□ -1.87
CD44-215ENST00000525241 OSBPL8Q9BZF1 889 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 WWP1Q9H0M0 922 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 TECRQ9NZ01 308 aaKnown RBP3.38□□□□□ -1.87
CD44-215ENST00000525241 ZNF581Q9P0T4 197 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 MGAT4AQ9UM21 535 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 KCNK6Q9Y257 313 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 A0A087WWV3 80 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 A0A1B0GTH9 108 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 TEX48A0A1B0GUV7 120 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SLC15A5A6NIM6 579 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SH3BGRLO75368 114 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 AKAP3O75969 853 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 VENTXO95231 258 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 CHRNGP07510 517 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 CYP3A5P20815 502 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 PPP2R1AP30153 589 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SPRP35270 261 aaPredicted RBP3.37□□□□□ -1.87
CD44-215ENST00000525241 NME5P56597 212 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 C17orf67Q0P5P2 114 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 MSLNQ13421 630 aaPredicted RBP3.37□□□□□ -1.87
CD44-215ENST00000525241 CYLC2Q14093 348 aaPredicted RBP3.37□□□□□ -1.87
CD44-215ENST00000525241 SGCBQ16585 318 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 PCK2Q16822 640 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 ZNF674Q2M3X9 581 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SMU1Q2TAY7 513 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 WSCD2Q2TBF2 565 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SLC39A12Q504Y0 691 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 Q6ZR54 194 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 LRRC49Q8IUZ0 686 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 CCDC170Q8IYT3 715 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SPAG16Q8N0X2 631 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SPEM1Q8N4L4 309 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 GVQW1Q8N7I0 195 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 NAT8LQ8N9F0 302 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SUMF1Q8NBK3 374 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 RNASE8Q8TDE3 154 aaKnown RBP3.37□□□□□ -1.87
CD44-215ENST00000525241 UBTD2Q8WUN7 234 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 DDX50Q9BQ39 737 aaKnown RBP3.37□□□□□ -1.87
CD44-215ENST00000525241 NT5DC2Q9H857 520 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 SP140LQ9H930 580 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 AKIRIN1Q9H9L7 192 aaPredicted RBP3.37□□□□□ -1.87
CD44-215ENST00000525241 GPR83Q9NYM4 423 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 STX8Q9UNK0 236 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 EXOC7Q9UPT5 735 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 FBXO7Q9Y3I1 522 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 CPQQ9Y646 472 aa3.37□□□□□ -1.87
CD44-215ENST00000525241 FGD5Q6ZNL6 1462 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 FAM170AA1A519 330 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 SH3PXD2BA1X283 911 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 CACNB4O00305 520 aaPredicted RBP3.36□□□□□ -1.87
CD44-215ENST00000525241 PSMD3O43242 534 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 ZNF354AO60765 605 aaPredicted RBP3.36□□□□□ -1.87
CD44-215ENST00000525241 GAS8O95995 478 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 CCDC159P0C7I6 412 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 OR9G9P0C7N8 305 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 CT45A8P0DMV1 189 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 CT45A9P0DMV2 189 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 MTIF2P46199 727 aaKnown RBP3.36□□□□□ -1.87
CD44-215ENST00000525241 CSRP3P50461 194 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 KRTAP10-3P60369 221 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 GK2Q14410 553 aaPredicted RBP3.36□□□□□ -1.87
CD44-215ENST00000525241 HEPACAMQ14CZ8 416 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 STX1AQ16623 288 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 CT45A2Q5DJT8 189 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 NHLRC3Q5JS37 347 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 DCAF12Q5T6F0 453 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 SEL1L3Q68CR1 1132 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 RFWD3Q6PCD5 774 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 ITIH5Q86UX2 942 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 IQCA1Q86XH1 822 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 SIDT2Q8NBJ9 832 aaKnown RBP3.36□□□□□ -1.87
CD44-215ENST00000525241 GOLGA5Q8TBA6 731 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 ITLN1Q8WWA0 313 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 PNPLA2Q96AD5 504 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 ESAMQ96AP7 390 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 NTNG2Q96CW9 530 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 SLC5A7Q9GZV3 580 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 TSPYL1Q9H0U9 437 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 SLC7A10Q9NS82 523 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms