RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 DNMT3AQ9Y6K1 912 aaPredicted RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 A8MU76 341 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 MID1O15344 667 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 KAT7O95251 611 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 GSRP00390 522 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 HSD17B2P37059 387 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 OPRL1P41146 370 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 PSMD4P55036 377 aaKnown RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 SIM1P81133 766 aaPredicted RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 HNRNPA0Q13151 305 aaKnown RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 RGNQ15493 299 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 HSF5Q4G112 596 aaPredicted RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 SPATC1Q76KD6 591 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 WBP2Q969T9 261 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 S100A13Q99584 98 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 RAD9AQ99638 391 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 SLC30A2Q9BRI3 323 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 PDCD10Q9BUL8 212 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 MED28Q9H204 178 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 OR51I1Q9H343 314 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 CEPT1Q9Y6K0 416 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 TRIP11Q15643 1979 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 PRAMEF33A0A0G2JMD5 474 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 TMEM221A6NGB7 291 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 GRXCR1A8MXD5 290 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF701M0R085 212 aaPredicted RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF195O14628 629 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 KIAA0513O60268 411 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 PRAMEF10O60809 474 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 SRPRAP08240 638 aaKnown RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 HK3P52790 923 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 GRSF1Q12849 480 aaKnown RBP eCLIP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 KCNC3Q14003 757 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 RUNDC3AQ59EK9 446 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 KHDRBS2Q5VWX1 349 aaKnown RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 ZSWIM9Q86XI8 627 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 CHERPQ8IWX8 916 aaKnown RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 GJD3Q8N144 294 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 SLC39A11Q8N1S5 342 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 FAM86B1Q8N7N1 296 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 C16orf78Q8WTQ4 265 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 TSEN15Q8WW01 171 aaKnown RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 PPP1R14AQ96A00 147 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 LRR1Q96L50 414 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF583Q96ND8 569 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 KCNN2Q9H2S1 579 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 PNO1Q9NRX1 252 aaKnown RBP11.19□□□□□ -0.62
SYNPO-204ENST00000519664 MARCH5Q9NX47 278 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 MBD2Q9UBB5 411 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 NRAPQ86VF7 1730 aa11.19□□□□□ -0.62
SYNPO-204ENST00000519664 UBE2QL1A1L167 161 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 BLOC1S5-TXNDC5H3BN57 136 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CRYZL1O95825 349 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 PFKLP17858 780 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 UQCRC2P22695 453 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 GADD45AP24522 165 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 PCSK6P29122 969 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 GRK6P43250 576 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 NKX2-5P52952 324 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 C22orf42Q6IC83 251 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 WDR53Q7Z5U6 358 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 SPARTQ8N0X7 666 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF740Q8NDX6 193 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CRELD1Q96HD1 420 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 TMEM80Q96HE8 168 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 OLAHQ9NV23 265 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 ATPIF1Q9UII2 106 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 ATG2BQ96BY7 2078 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 M0R3H8 397 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 OR7A17O14581 309 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 VILLO15195 856 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 B4GALT3O60512 393 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 SHMT2P34897 504 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 HNRNPFP52597 415 aaKnown RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CRISP1P54107 249 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 UBXN2BQ14CS0 331 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 FBXO43Q4G163 708 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF776Q68DI1 518 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 GAREM2Q75VX8 874 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 KLHL36Q8N4N3 616 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 GOLM1Q8NBJ4 401 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 SH3YL1Q96HL8 342 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 PLAC1Q9HBJ0 212 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 TAS2R7Q9NYW3 318 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 SARDHQ9UL12 918 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CDH7Q9ULB5 785 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 KRBA1A5PL33 1030 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 PSMD9O00233 223 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 KHNYNO15037 678 aaKnown RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CPNE3O75131 537 aaKnown RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF821O75541 412 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 HOXC5Q00444 222 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 GSTM4Q03013 218 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 SPHARQ15513 63 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 UGT8Q16880 541 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 FOXB2Q5VYV0 432 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 SBSNQ6UWP8 590 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 VRK3Q8IV63 474 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 TEX26Q8N6G2 289 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms