RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LACTB2Q53H82 288 aaPredicted RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 AGAP7PQ5VUJ5 663 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 FAM219BQ5XKK7 198 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 Q6ZSR9 355 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 CLNKQ7Z7G1 428 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 DDIASQ8IXT1 998 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 DAZLQ92904 295 aaKnown RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 RBM18Q96H35 190 aaKnown RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 AGAP4Q96P64 663 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 SMAD5Q99717 465 aaKnown RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 TUBB1Q9H4B7 451 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 LRTM1Q9HBL6 345 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 MMP25Q9NPA2 562 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 PNO1Q9NRX1 252 aaKnown RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 HAO1Q9UJM8 370 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 TMED5Q9Y3A6 229 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 CCL27Q9Y4X3 112 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 PCDHA9Q9Y5H5 950 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 PCSK5Q92824 1860 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 EIF4E1BA6NMX2 242 aaKnown RBP13.35□□□□□ -0.27
NUP54-216ENST00000514901 TMEM233B4DJY2 109 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 KLF11O14901 512 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 DYRK3O43781 588 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 LDB3O75112 727 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 LYPLA1O75608 230 aaPredicted RBP13.35□□□□□ -0.27
NUP54-216ENST00000514901 ANXA4P09525 319 aaPredicted RBP13.35□□□□□ -0.27
NUP54-216ENST00000514901 LINC00032P0C843 101 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 PIK3R1P27986 724 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 SLC26A5P58743 744 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 RAE1P78406 368 aaKnown RBP13.35□□□□□ -0.27
NUP54-216ENST00000514901 FOLH1Q04609 750 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 LY6DQ14210 128 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 HEPACAMQ14CZ8 416 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 KIAA0040Q15053 153 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 NR6A1Q15406 480 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 CRB2Q5IJ48 1285 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 CES4AQ5XG92 561 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 ATG14Q6ZNE5 492 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 OR4K14Q8NGD5 310 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 OR14A16Q8NHC5 309 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 DNAJB14Q8TBM8 379 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 AGR3Q8TD06 166 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 C16orf78Q8WTQ4 265 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 TM9SF4Q92544 642 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 PPP3R2Q96LZ3 170 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 DGAT2Q96PD7 388 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 LMF1Q96S06 567 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 ZNF552Q9H707 407 aaPredicted RBP13.35□□□□□ -0.27
NUP54-216ENST00000514901 ZNF446Q9NWS9 450 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 TEX10Q9NXF1 929 aaPredicted RBP13.35□□□□□ -0.27
NUP54-216ENST00000514901 TEKT2Q9UIF3 430 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 PPIEQ9UNP9 301 aaKnown RBP13.35□□□□□ -0.27
NUP54-216ENST00000514901 CLCA3PQ9Y6N3 262 aa13.35□□□□□ -0.27
NUP54-216ENST00000514901 CROCCQ5TZA2 2017 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 GLOD5A6NK44 160 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 A8MUA0 341 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 TGFBR3LH3BV60 316 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 MASP2O00187 686 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 PIP5K1BO14986 540 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 PGRMC2O15173 223 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 FGF17O60258 216 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 SNNO75324 88 aaPredicted RBP13.34□□□□□ -0.27
NUP54-216ENST00000514901 SLC35E2P0CK97 266 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 ALOX15P16050 662 aaPredicted RBP13.34□□□□□ -0.27
NUP54-216ENST00000514901 TNNI3P19429 210 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 GALNSP34059 522 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 STT3AP46977 705 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 TAS2R50P59544 299 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 PPP2R2AP63151 447 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 PLIN5Q00G26 463 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 ZNF763Q0D2J5 394 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 SOWAHCQ53LP3 525 aaPredicted RBP13.34□□□□□ -0.27
NUP54-216ENST00000514901 NOXRED1Q6NXP6 359 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 ASB18Q6ZVZ8 466 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 OR4N5Q8IXE1 308 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 SAMD14Q8IZD0 417 aaPredicted RBP13.34□□□□□ -0.27
NUP54-216ENST00000514901 ST13P4Q8IZP2 240 aaPredicted RBP13.34□□□□□ -0.27
NUP54-216ENST00000514901 ZNF781Q8N8C0 355 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 MORN4Q8NDC4 146 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 NFAM1Q8NET5 270 aaPredicted RBP13.34□□□□□ -0.27
NUP54-216ENST00000514901 B3GNT7Q8NFL0 401 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 SORT1Q99523 831 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 NUDT9Q9BW91 350 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 C20orf27Q9GZN8 174 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 ZNF395Q9H8N7 513 aaPredicted RBP13.34□□□□□ -0.27
NUP54-216ENST00000514901 DLGAP4Q9Y2H0 992 aa13.34□□□□□ -0.27
NUP54-216ENST00000514901 BOD1L1Q8NFC6 3051 aa13.33□□□□□ -0.27
NUP54-216ENST00000514901 SLCO1B7G3V0H7 640 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 CDK2AP1O14519 115 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 LSM1O15116 133 aaKnown RBP13.33□□□□□ -0.28
NUP54-216ENST00000514901 DPM1O60762 260 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 MAPK1P28482 360 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 CLCN2P51788 898 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 XKP51811 444 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 ID2Q02363 134 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 ATP6AP1LQ52LC2 224 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 HSP90B2PQ58FF3 399 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 XKR7Q5GH72 579 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 H3F3CQ6NXT2 135 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 SLC48A1Q6P1K1 146 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms