RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SULT2A1Q06520 285 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 CLPPQ16740 277 aaPredicted RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 LRRC37A5PQ49AS3 106 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 BOLA3Q53S33 107 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 TCEAL6Q6IPX3 200 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 CCDC186Q7Z3E2 898 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 PIGWQ7Z7B1 504 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 KRT222Q8N1A0 295 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 TEX9Q8N6V9 391 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 ZNF781Q8N8C0 355 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 GOLGA5Q8TBA6 731 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 TEKT4Q8WW24 435 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 LRRC45Q96CN5 670 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 FAM122AQ96E09 287 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 LINC00615Q96LM1 132 aaPredicted RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 MUS81Q96NY9 551 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 NAP1L3Q99457 506 aaPredicted RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 SH3GL1Q99961 368 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 SLC39A3Q9BRY0 314 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 XPO4Q9C0E2 1151 aaKnown RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 KLHL4Q9C0H6 718 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 ANKRD2Q9GZV1 360 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 SNX25Q9H3E2 840 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 FNDC4Q9H6D8 234 aaPredicted RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 CNOT10Q9H9A5 744 aaKnown RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 GRPEL1Q9HAV7 217 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 UBE2TQ9NPD8 197 aaPredicted RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 HOMER3Q9NSC5 361 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 NKIRAS2Q9NYR9 191 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 MRPL15Q9P015 296 aaKnown RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 AGTPBP1Q9UPW5 1226 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 TMEM5Q9Y2B1 443 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 FAM169AQ9Y6X4 670 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 PTPRGP23470 1445 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 SCAPERQ9BY12 1400 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 SYNDIG1LA6NDD5 238 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 GLOD5A6NK44 160 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 BOLA2-SMG1P6H3BVE0 249 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 PDLIM1O00151 329 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 NEMFO60524 1076 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 TBCAO75347 108 aaKnown RBP1.69□□□□□ -2.14
NUP54-208ENST00000508604 RECQL5O94762 991 aaPredicted RBP1.69□□□□□ -2.14
NUP54-208ENST00000508604 TSPY4P0CV99 314 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 TSPY10P0CW01 314 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 RPA1P27694 616 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 KIF5BP33176 963 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 NNMTP40261 264 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 P2RY4P51582 365 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 PSMD7P51665 324 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 EVCP57679 992 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 RPS27AP62979 156 aaKnown RBP1.69□□□□□ -2.14
NUP54-208ENST00000508604 CTAG1AP78358 180 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 EBI3Q14213 229 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 SLMAPQ14BN4 828 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 RFTN2Q52LD8 501 aaPredicted RBP1.69□□□□□ -2.14
NUP54-208ENST00000508604 CFAP58Q5T655 872 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 C2orf66Q6UXQ4 117 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 C15orf52Q6ZUT6 534 aaKnown RBP1.69□□□□□ -2.14
NUP54-208ENST00000508604 PRPF39Q86UA1 669 aaKnown RBP1.69□□□□□ -2.14
NUP54-208ENST00000508604 DNAAF5Q86Y56 855 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 SLC4A11Q8NBS3 891 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 KCTD6Q8NC69 237 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 Q8NFD4 153 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 SUN5Q8TC36 379 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 BRSK1Q8TDC3 778 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 VN1R17PQ8TDU5 208 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 ANKRD7Q92527 254 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 TBC1D31Q96DN5 1066 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 CAPS2Q9BXY5 557 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 TXLNGYQ9BZA5 131 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 GPR88Q9GZN0 384 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 VCX3BQ9H321 246 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 ST6GALNAC4Q9H4F1 302 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 ISG20L2Q9H9L3 353 aaKnown RBP1.69□□□□□ -2.14
NUP54-208ENST00000508604 CHMP5Q9NZZ3 219 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 WDR35Q9P2L0 1181 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 EPS15L1Q9UBC2 864 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 GIMAP2Q9UG22 337 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 TRAF3IP3Q9Y228 551 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 NOSIPQ9Y314 301 aaKnown RBP1.69□□□□□ -2.14
NUP54-208ENST00000508604 NACAE9PAV3 2078 aa1.69□□□□□ -2.14
NUP54-208ENST00000508604 GAKO14976 1311 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 IGLV3-16A0A075B6K0 115 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 EDDM13A0A1B0GTR0 161 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 URADA6NGE7 173 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 GOLGA6L10A6NI86 522 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 H3BMM5 538 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 PANO1I0J062 215 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 M0QX08 132 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 GPAA1O43292 621 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 FRAT2O75474 233 aaPredicted RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 CA11O75493 328 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 NEBLO76041 1014 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 GCFC2P16383 781 aaKnown RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 CD9P21926 228 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 PPP2R1AP30153 589 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 DUTP33316 252 aaKnown RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 S100A5P33763 92 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 KRT20P35900 424 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 LIG4P49917 911 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms