RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 CEACAM8P31997 349 aaPredicted RBP13.52□□□□□ -0.25
TRAF4-212ENST00000498540 KEAP1Q14145 624 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 FBXO48Q5FWF7 155 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 FBXW10Q5XX13 1052 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 FRA10AC1Q70Z53 315 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 UBE3DQ7Z6J8 389 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 GAS2L3Q86XJ1 694 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 KRTAP1-3Q8IUG1 177 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 NKAPQ8N5F7 415 aaKnown RBP13.52□□□□□ -0.25
TRAF4-212ENST00000498540 NUBPLQ8TB37 319 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 SLC22A8Q8TCC7 542 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 ANKRD49Q8WVL7 239 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 ANKRD7Q92527 254 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 KIAA1191Q96A73 305 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 SPACA9Q96E40 222 aaPredicted RBP13.52□□□□□ -0.25
TRAF4-212ENST00000498540 C18orf12Q96KH6 178 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 JSRP1Q96MG2 331 aaPredicted RBP13.52□□□□□ -0.25
TRAF4-212ENST00000498540 WDR83Q9BRX9 315 aaKnown RBP13.52□□□□□ -0.25
TRAF4-212ENST00000498540 TMEM79Q9BSE2 394 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 NAT9Q9BTE0 207 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 LYRM4Q9HD34 91 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 ACKR4Q9NPB9 350 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 HRKO00198 91 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 RTCAO00442 366 aaKnown RBP13.51□□□□□ -0.25
TRAF4-212ENST00000498540 FGF17O60258 216 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 IGKV3-11P04433 115 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 CD22P20273 847 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 HOXC12P31275 282 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 HPDP32754 393 aaPredicted RBP13.51□□□□□ -0.25
TRAF4-212ENST00000498540 KCNC1P48547 511 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 ZNF136P52737 540 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 DGAT2L6Q6ZPD8 337 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 ADAMTSL2Q86TH1 951 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 OR4N5Q8IXE1 308 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 LIX1Q8N485 282 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 FAM13CQ8NE31 585 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 OR10G3Q8NGC4 313 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 LRRC46Q96FV0 321 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 SENP5Q96HI0 755 aaPredicted RBP13.51□□□□□ -0.25
TRAF4-212ENST00000498540 KCNC2Q96PR1 638 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 PITHD1Q9GZP4 211 aaPredicted RBP13.51□□□□□ -0.25
TRAF4-212ENST00000498540 PLEKHF2Q9H8W4 249 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 QPCTLQ9NXS2 382 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 GPRC5BQ9NZH0 403 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 CTNNAL1Q9UBT7 734 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 MTRF1LQ9UGC7 380 aaKnown RBP13.51□□□□□ -0.25
TRAF4-212ENST00000498540 CHMP2BQ9UQN3 213 aa13.51□□□□□ -0.25
TRAF4-212ENST00000498540 CHCHD2Q9Y6H1 151 aaPredicted RBP13.51□□□□□ -0.25
TRAF4-212ENST00000498540 C15orf38-AP3S2A0A0A6YYH1 394 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 FAM95CA0A1B0GW59 222 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 TUBAL3A6NHL2 446 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 DNALI1O14645 258 aaPredicted RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 TAPBPO15533 448 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 EPPINO95925 133 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 INHBBP09529 407 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 EPXP11678 715 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 ATP5A1P25705 553 aaKnown RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 ADSLP30566 484 aaPredicted RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 ELK3P41970 407 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 FNTAP49354 379 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 TAS2R39P59534 338 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 IGLV3-21P80748 117 aaPredicted RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 TGM3Q08188 693 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 CRYZQ08257 329 aaKnown RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 DUSP8Q13202 625 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 DOC2AQ14183 400 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 PPP1R7Q15435 360 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 TMEM198Q66K66 360 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 CHSY3Q70JA7 882 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 MAATS1Q7Z4T9 603 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 ZC3HC1Q86WB0 502 aaKnown RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 LACC1Q8IV20 430 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 ACOT4Q8N9L9 421 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 LINC01560Q8TB33 94 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 DOK4Q8TEW6 326 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 GRK7Q8WTQ7 553 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 ESAMQ96AP7 390 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 PPWD1Q96BP3 646 aaKnown RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 EHD1Q9H4M9 534 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 DNAJC11Q9NVH1 559 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 ZNF629Q9UEG4 869 aaPredicted RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 ASIC3Q9UHC3 531 aa13.5□□□□□ -0.25
TRAF4-212ENST00000498540 FOXD3Q9UJU5 478 aaPredicted RBP13.5□□□□□ -0.25
TRAF4-212ENST00000498540 DOCK7Q96N67 2140 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 AHRRA9YTQ3 701 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 PGRMC1O00264 195 aaKnown RBP13.49□□□□□ -0.25
TRAF4-212ENST00000498540 SH3BGRLO75368 114 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 FBXO45P0C2W1 286 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 COX7A2P14406 83 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 GDF1P27539 372 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 TIMP3P35625 211 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 STT3AP46977 705 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 AGFG1P52594 562 aaKnown RBP13.49□□□□□ -0.25
TRAF4-212ENST00000498540 DCAF7P61962 342 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 TGFBIQ15582 683 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 STEAP4Q687X5 459 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 CLEC9AQ6UXN8 241 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 SLC15A4Q8N697 577 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 SNX31Q8N9S9 440 aa13.49□□□□□ -0.25
TRAF4-212ENST00000498540 ARSGQ96EG1 525 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms