RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 STXBP2Q15833 593 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 TAF1BQ53T94 588 aaPredicted RBP3.69□□□□□ -1.82
SMC4-224ENST00000494612 LCE3AQ5TA76 89 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 PLPP4Q5VZY2 271 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 NEPROQ6NW34 567 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 ZNF730Q6ZMV8 503 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 MCM10Q7L590 875 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 NLRP14Q86W24 1093 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 OR10G7Q8NGN6 311 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 GANCQ8TET4 914 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 MRPL53Q96EL3 112 aaKnown RBP3.69□□□□□ -1.82
SMC4-224ENST00000494612 MOCOSQ96EN8 888 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 PRICKLE1Q96MT3 831 aaPredicted RBP3.69□□□□□ -1.82
SMC4-224ENST00000494612 TNFRSF13CQ96RJ3 184 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 GAL3ST4Q96RP7 486 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 AGPAT1Q99943 283 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 CCM2Q9BSQ5 444 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 CABLES2Q9BTV7 478 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 MCRIP2Q9BUT9 160 aaKnown RBP3.69□□□□□ -1.82
SMC4-224ENST00000494612 WWTR1Q9GZV5 400 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 DCLRE1BQ9H816 532 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 MUTYHQ9UIF7 546 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 ERVK-19Q9WJR5 959 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 TDRKHQ9Y2W6 561 aaKnown RBP3.69□□□□□ -1.82
SMC4-224ENST00000494612 MRPS18CQ9Y3D5 142 aaKnown RBP3.69□□□□□ -1.82
SMC4-224ENST00000494612 CLIP1P30622 1438 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 PTPRKQ15262 1439 aa3.69□□□□□ -1.82
SMC4-224ENST00000494612 TCOF1Q13428 1488 aaKnown RBP3.68□□□□□ -1.82
SMC4-224ENST00000494612 MLH3Q9UHC1 1453 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 POLR1AO95602 1720 aaPredicted RBP3.68□□□□□ -1.82
SMC4-224ENST00000494612 LOC105371242A0A075B767 164 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 IGKV3D-15A0A087WSY6 115 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 TMCO5BA8MYB1 307 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 TLR4O00206 839 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 SOCS3O14543 225 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 OGTO15294 1046 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 INPP4BO15327 924 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 TNFSF12O43508 249 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 MTRF1O75570 445 aaKnown RBP3.68□□□□□ -1.82
SMC4-224ENST00000494612 NXPH4O95158 308 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 POP4O95707 220 aaKnown RBP3.68□□□□□ -1.82
SMC4-224ENST00000494612 OLFM2O95897 454 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 MT-ND3P03897 115 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 ADORA3P0DMS8 318 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 MYOGP15173 224 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 NDST2P52849 883 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 RPS27AP62979 156 aaKnown RBP3.68□□□□□ -1.82
SMC4-224ENST00000494612 HERV-K104P63124 156 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 CD300CQ08708 224 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 NFATC2Q13469 925 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 ITPK1Q13572 414 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 HEPACAMQ14CZ8 416 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 TRADDQ15628 312 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 STX1AQ16623 288 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 KNOP1Q1ED39 458 aaKnown RBP3.68□□□□□ -1.82
SMC4-224ENST00000494612 C2CD6Q53TS8 623 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 DCAF12Q5T6F0 453 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 ZNF410Q86VK4 478 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 OR4L1Q8NH43 312 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 CHPT1Q8WUD6 406 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 PKP2Q99959 881 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 TRIM7Q9C029 511 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 CXXC4Q9H2H0 198 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 DPEP3Q9H4B8 488 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 VIPAS39Q9H9C1 493 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 DBNDD1Q9H9R9 158 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 WDR41Q9HAD4 459 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 DDX28Q9NUL7 540 aaKnown RBP3.68□□□□□ -1.82
SMC4-224ENST00000494612 NDE1Q9NXR1 346 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 TEX264Q9Y6I9 313 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 ITSN2Q9NZM3 1697 aa3.68□□□□□ -1.82
SMC4-224ENST00000494612 SHANK2Q9UPX8 1470 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 CDC42BPBQ9Y5S2 1711 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 KIDINS220Q9ULH0 1771 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 ABCC1P33527 1531 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 IGKV3D-20A0A0C4DH25 116 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 IGHV3-20A0A0C4DH32 117 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 IQCMA0A1B0GVH7 501 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 OR5H15A6NDH6 313 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 ASB14A6NK59 587 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 A8MXK9 166 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 NEDD8-MDP1E9PL57 170 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 E9PQ18 207 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 OR6A2O95222 327 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 TRIM49P0CI25 452 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 TRIM49CP0CI26 452 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 TPBGLP0DKB5 382 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 KRT5P13647 590 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 AZU1P20160 251 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 EDNRAP25101 427 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 STIP1P31948 543 aaKnown RBP3.67□□□□□ -1.82
SMC4-224ENST00000494612 PITPNBP48739 271 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 NOVP48745 357 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 NT5C2P49902 561 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 NDUFV3P56181 108 aaKnown RBP3.67□□□□□ -1.82
SMC4-224ENST00000494612 GSCP56915 257 aaPredicted RBP3.67□□□□□ -1.82
SMC4-224ENST00000494612 ABCE1P61221 599 aaKnown RBP3.67□□□□□ -1.82
SMC4-224ENST00000494612 ERVK-16P61578 105 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 ARF5P84085 180 aa3.67□□□□□ -1.82
SMC4-224ENST00000494612 MLF2Q15773 248 aaPredicted RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms