RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	GRIP1	Q9Y3R0	1128 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	RALGAPA1	Q6GYQ0	2036 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SERTM2	A0A1B0GWG4	89 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	METTL15	A6NJ78	407 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SAGE2P	A6NJ88	616 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	PDZK1P1	A8MUH7	402 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	PATE3	B3GLJ2	98 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	CCDC188	H7C350	402 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SEC14L5	O43304	696 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	HTRA2	O43464	458 aa	Predicted RBP	11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	MT-CYB	P00156	380 aa	Predicted RBP	11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	IFNG	P01579	166 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	STAG3L3	P0CL85	134 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	CD36	P16671	472 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	ZNF30	P17039	623 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	PRPS1L1	P21108	318 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	CD68	P34810	354 aa	Predicted RBP	11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	PLA2G5	P39877	138 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	POLR2L	P62875	67 aa	Known RBP	11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	ELP6	Q0PNE2	266 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	IHH	Q14623	411 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	GPR33	Q49SQ1	333 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	PAN3	Q58A45	887 aa	Known RBP	11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	LDLRAP1	Q5SW96	308 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	LIPI	Q6XZB0	460 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SYT12	Q8IV01	421 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SLC35B2	Q8TB61	432 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	CXorf40A	Q8TE69	158 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	EDARADD	Q8WWZ3	215 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	IMP4	Q96G21	291 aa	Known RBP	11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	DCUN1D1	Q96GG9	259 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SLC25A51	Q9H1U9	297 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SPNS1	Q9H2V7	528 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	GPN2	Q9H9Y4	310 aa	Predicted RBP	11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	EFCAB1	Q9HAE3	211 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	PNPLA3	Q9NST1	481 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	TREM2	Q9NZC2	230 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	MTO1	Q9Y2Z2	717 aa	Known RBP	11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SLCO1B1	Q9Y6L6	691 aa		11.07	□□□□□ -0.64
BRCA1-222	ENST00000493919	SLC31A1	O15431	190 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	LIAS	O43766	372 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	FMO6P	O60774	539 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	H2AFY	O75367	372 aa	Known RBP	11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	PMPCB	O75439	489 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	MED6	O75586	246 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	POP7	O75817	140 aa	Known RBP	11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	CSTA	P01040	98 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	PROC	P04070	461 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	MMP2	P08253	660 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	ADRB1	P08588	477 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	H2AFB1	P0C5Y9	115 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	H2AFB2	P0C5Z0	115 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	CBSL	P0DN79	551 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	CTPS1	P17812	591 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	SPI1	P17947	270 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	CHRM3	P20309	590 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	AHCY	P23526	432 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	GIF	P27352	417 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	GCA	P28676	217 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	CBS	P35520	551 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	MMP12	P39900	470 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	ACAA2	P42765	397 aa	Known RBP	11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	MLLT10	P55197	1068 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	TXNL4A	P83876	142 aa	Known RBP	11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	DNASE1L3	Q13609	305 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	PPP1R3A	Q16821	1122 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	FAM214A	Q32MH5	1076 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	RNF212	Q495C1	297 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	TRIM61	Q5EBN2	209 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	CCNYL2	Q5T2Q4	361 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	KIAA1161	Q6NSJ0	714 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	SLC27A4	Q6P1M0	643 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	USP53	Q70EK8	1073 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	PRPF39	Q86UA1	669 aa	Known RBP	11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	TRIM69	Q86WT6	500 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	GID4	Q8IVV7	300 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	RBFA	Q8N0V3	343 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	OR1M1	Q8NGA1	313 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	OR4M2	Q8NGB6	313 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	ELMO2	Q96JJ3	720 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	SERAC1	Q96JX3	654 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	CNBD2	Q96M20	576 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	SLC6A18	Q96N87	628 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	SPATA13	Q96N96	652 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	DERL2	Q9GZP9	239 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	ZDHHC18	Q9NUE0	388 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	SDHAF2	Q9NX18	166 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	BFAR	Q9NZS9	450 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	PILRB	Q9UKJ0	227 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	BAIAP2	Q9UQB8	552 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	PCDHGA5	Q9Y5G8	931 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	COPG1	Q9Y678	874 aa	Known RBP	11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919	GVINP1	Q7Z2Y8	2422 aa		11.06	□□□□□ -0.64
BRCA1-222	ENST00000493919		A0A0B4J293	547 aa		11.05	□□□□□ -0.64
BRCA1-222	ENST00000493919		A0A1W2PPC4	97 aa		11.05	□□□□□ -0.64
BRCA1-222	ENST00000493919		H7C2Y5	167 aa		11.05	□□□□□ -0.64
BRCA1-222	ENST00000493919	NUDT21	O43809	227 aa	Known RBP	11.05	□□□□□ -0.64
BRCA1-222	ENST00000493919	MMP20	O60882	483 aa		11.05	□□□□□ -0.64
BRCA1-222	ENST00000493919	DIRAS3	O95661	229 aa		11.05	□□□□□ -0.64
BRCA1-222	ENST00000493919	CD3G	P09693	182 aa		11.05	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms