RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MEA1Q16626 185 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 LETM2Q2VYF4 491 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 HLA-BQ31612 363 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 MAJINQ3KP22 176 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC14Q49A88 953 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CAVIN4Q5BKX8 364 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ADAMTSL4-AS1Q5T5F5 129 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 LCN1P1Q5VSP4 162 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SUSD4Q5VX71 490 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 METTL21CQ5VZV1 264 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ATL3Q6DD88 541 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 C11orf63Q6NUN7 778 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 TATDN1Q6P1N9 297 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 METTL7BQ6UX53 244 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 RFPL4BQ6ZWI9 263 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PPP1R42Q7Z4L9 355 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PIGZQ86VD9 579 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 MYPOPQ86VE0 399 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 VPS36Q86VN1 386 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CLVS1Q8IUQ0 354 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 TMEM139Q8IV31 216 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ITPRIPQ8IWB1 547 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SLC38A6Q8IZM9 456 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 EID3Q8N140 333 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CCAR2Q8N163 923 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ARHGAP24Q8N264 748 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 MARVELD2Q8N4S9 558 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 NATD1Q8N6N6 113 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 TEX9Q8N6V9 391 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF614Q8N883 585 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 LSMEM1Q8N8F7 131 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 BMPERQ8N8U9 685 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC148Q8NFR7 591 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 OR2T11Q8NH01 316 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 OR4C3Q8NH37 302 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 GRHL3Q8TE85 626 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PHLDA1Q8WV24 401 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SSMEM1Q8WWF3 244 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 HPSE2Q8WWQ2 592 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 DYRK2Q92630 601 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CDKL2Q92772 493 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SYN2Q92777 582 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 KIFAP3Q92845 792 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 NXNL1Q96CM4 212 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SPACA9Q96E40 222 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CFAP36Q96G28 342 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PRAC1Q96KF2 57 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 POM121L2Q96KW2 1035 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC42Q96M95 316 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 GLT1D1Q96MS3 346 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CATSPER2Q96P56 530 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 TSGA13Q96PP4 275 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CIB1Q99828 191 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SLF1Q9BQI6 1058 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 FUCA2Q9BTY2 467 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 APOL6Q9BWW8 343 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 AP1M1Q9BXS5 423 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CALN1Q9BXU9 219 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 DGCR6LQ9BY27 220 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CARD9Q9H257 536 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PPIL3Q9H2H8 161 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ARRDC1-AS1Q9H2J1 176 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ATP13A3Q9H7F0 1226 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PSTPIP2Q9H939 334 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 DMAP1Q9NPF5 467 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 EQTNQ9NQ60 294 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF71Q9NQZ8 489 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 C8orf4Q9NR00 106 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SDR39U1Q9NRG7 319 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SERINC1Q9NRX5 453 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 EPHA6Q9UF33 1036 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 MTRF1LQ9UGC7 380 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SLC24A2Q9UI40 661 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 RPS6KA6Q9UK32 745 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 KLK13Q9UKR3 277 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PA2G4Q9UQ80 394 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 TNNQ9UQP3 1299 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CFL2Q9Y281 166 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ASB3Q9Y575 518 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 USP16Q9Y5T5 823 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SNX8Q9Y5X2 465 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 USH1CQ9Y6N9 552 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 WDR81Q562E7 1941 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CHD9Q3L8U1 2897 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 UBN2Q6ZU65 1347 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CEP295Q9C0D2 2601 aa1.9□□□□□ -2.1
HMGB1-208ENST00000490788 AK9Q5TCS8 1911 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FRMPD3Q5JV73 1810 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 LOC102723996A0A087X1L8 192 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 A0A0J9YVX5 310 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC162PA2VCL2 907 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 VPS37CA5D8V6 355 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 GLOD5A6NK44 160 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SNTNA6NMZ2 147 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 HEPACAM2A8MVW5 462 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PALM2-AKAP2B1ALY0 433 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 E2F3O00716 465 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CXCL11O14625 94 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ADAMDEC1O15204 470 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms