RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SQSTM1Q13501 440 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 SNAP47Q5SQN1 464 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 HMBOX1Q6NT76 420 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 PTOV1Q86YD1 416 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 C19orf47Q8N9M1 422 aaKnown RBP13.42□□□□□ -0.26
CUX1-209ENST00000487284 CATSPER1Q8NEC5 780 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 UTP15Q8TED0 518 aaKnown RBP13.42□□□□□ -0.26
CUX1-209ENST00000487284 POP5Q969H6 163 aaKnown RBP13.42□□□□□ -0.26
CUX1-209ENST00000487284 CD180Q99467 661 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 SLC35A5Q9BS91 424 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 ROGDIQ9GZN7 287 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 FAM60AQ9NP50 221 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 SLAMF7Q9NQ25 335 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 LYARQ9NX58 379 aaKnown RBP13.42□□□□□ -0.26
CUX1-209ENST00000487284 PCNX2A6NKB5 2137 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 ADAMTS20P59510 1910 aa13.42□□□□□ -0.26
CUX1-209ENST00000487284 LOC105369274A0A096LPK9 316 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 LOC102723532A0A0G2JNH3 316 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 A0A1W2PR48 441 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 URADA6NGE7 173 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 H0YGG7 62 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 GP1BAP07359 652 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 ZNF888P0CJ79 500 aaPredicted RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 FCGR1AP12314 374 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 ACADSP16219 412 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 IL1RNP18510 177 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 ATP6V1C1P21283 382 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 ARF3P61204 181 aaPredicted RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 MLC1Q15049 377 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 RGNQ15493 299 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 ADRM1Q16186 407 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 LRRC36Q1X8D7 754 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 VMACQ2NL98 169 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 GRAMD1BQ3KR37 738 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 FRMPD2BQ6IN97 320 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 TMEM71Q6P5X7 295 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 ZNF574Q6ZN55 896 aaPredicted RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 PIP4P1Q86T03 277 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 PDSS2Q86YH6 399 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 OR4N4Q8N0Y3 316 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 PNPT1Q8TCS8 783 aaKnown RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 FAM162AQ96A26 154 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 CDC6Q99741 560 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 EPS8L2Q9H6S3 715 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 NEUROD4Q9HD90 331 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 AGPAT4Q9NRZ5 378 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 ACSS1Q9NUB1 689 aaPredicted RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 OLAHQ9NV23 265 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 DTNAQ9Y4J8 743 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 ATG4BQ9Y4P1 393 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 COL27A1Q8IZC6 1860 aaPredicted RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 CEP250Q9BV73 2442 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 A8MU76 341 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 NTN3O00634 580 aaPredicted RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 AIFM1O95831 613 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 BMP2P12643 396 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 UQCRC2P22695 453 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 SEPHS1P49903 392 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 BTN3A2P78410 334 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 FADDQ13158 208 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 VEZF1Q14119 521 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 DEFB110Q30KQ9 67 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 CCDC157Q569K6 752 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 SFT2D3Q587I9 215 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 MANEAQ5SRI9 462 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 DGLUCYQ7Z3D6 616 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 CLEC4FQ8N1N0 589 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 OR52N2Q8NGI0 321 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 PSMA8Q8TAA3 256 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 NCLNQ969V3 563 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 RERGQ96A58 199 aaPredicted RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 EXOSC8Q96B26 276 aaKnown RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 ZBED6CLQ96FA7 236 aaPredicted RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 NAF1Q96HR8 494 aaKnown RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 ZNF570Q96NI8 536 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 GFM1Q96RP9 751 aaKnown RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 SERINC2Q96SA4 455 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 CXorf36Q9H7Y0 433 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 DCAF13Q9NV06 445 aaKnown RBP13.41□□□□□ -0.26
CUX1-209ENST00000487284 GPATCH2Q9NW75 528 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 C5AR2Q9P296 337 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 CCDC88CQ9P219 2028 aa13.41□□□□□ -0.26
CUX1-209ENST00000487284 PTPRZ1P23471 2315 aaPredicted RBP13.4□□□□□ -0.26
CUX1-209ENST00000487284 D6RAR5 112 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 ZSCAN9O15535 394 aaPredicted RBP13.4□□□□□ -0.26
CUX1-209ENST00000487284 PROM1O43490 865 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 HCRTR1O43613 425 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 TNFRSF21O75509 655 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 KRT75O95678 551 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 HOXB6P17509 224 aaKnown RBP13.4□□□□□ -0.26
CUX1-209ENST00000487284 FASP25445 335 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 LIMK1P53667 647 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 SNRPNP63162 240 aaKnown RBP13.4□□□□□ -0.26
CUX1-209ENST00000487284 VAC14Q08AM6 782 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.4□□□□□ -0.26
CUX1-209ENST00000487284 ABHD13Q7L211 337 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 PRSS42Q7Z5A4 293 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 AMIGO2Q86SJ2 522 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 ZNF655Q8N720 491 aaPredicted RBP13.4□□□□□ -0.26
CUX1-209ENST00000487284 FAM86B1Q8N7N1 296 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms